Protein–RNA interactions for Protein: Q92890

UFD1, Ubiquitin recognition factor in ER-associated degradation protein 1, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1Q92890 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.88□□□□□ -2.27
UFD1Q92890 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.88□□□□□ -2.27
UFD1Q92890 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.88□□□□□ -2.27
UFD1Q92890 AC005828.6-201ENST00000606610 232 ntBASIC0.88□□□□□ -2.27
UFD1Q92890 AC007014.2-201ENST00000615581 479 ntBASIC0.88□□□□□ -2.27
UFD1Q92890 AC127459.3-201ENST00000624328 466 ntBASIC0.88□□□□□ -2.27
UFD1Q92890 MIR3674-201ENST00000636576 68 ntBASIC0.88□□□□□ -2.27
UFD1Q92890 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.88□□□□□ -2.27
UFD1Q92890 AL391516.1-201ENST00000554380 2449 ntBASIC0.88□□□□□ -2.27
UFD1Q92890 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.87□□□□□ -2.27
UFD1Q92890 MIRLET7C-201ENST00000362160 84 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 Y_RNA.124-201ENST00000363339 93 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 Y_RNA.482-201ENST00000384377 111 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 MIR520G-201ENST00000385064 90 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 RNA5SP475-201ENST00000410568 110 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 RNU5A-5P-201ENST00000411054 116 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.87□□□□□ -2.27
UFD1Q92890 AC009474.2-201ENST00000451383 136 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.87□□□□□ -2.27
UFD1Q92890 Y_RNA.655-201ENST00000515919 96 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 RNU6-947P-201ENST00000516264 106 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 AL357312.1-201ENST00000603879 298 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 AL353997.5-201ENST00000618886 171 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 AL353770.2-201ENST00000620024 78 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 AC073869.6-201ENST00000640656 341 ntBASIC0.87□□□□□ -2.27
UFD1Q92890 Y_RNA.88-201ENST00000363029 99 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 SNORA7.1-201ENST00000363750 139 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 RNU4-38P-201ENST00000364472 129 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 Y_RNA.404-201ENST00000383978 102 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 SNORD12-201ENST00000391002 90 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 SNORA11.2-201ENST00000408318 127 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 SUMO1P2-201ENST00000452524 304 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 AC069439.1-201ENST00000494739 167 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 AC005899.2-201ENST00000584353 90 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 AC060780.3-201ENST00000589464 80 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 AL117336.2-201ENST00000602435 335 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 AC092794.2-201ENST00000620933 563 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.86□□□□□ -2.27
UFD1Q92890 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
UFD1Q92890 Y_RNA.140-201ENST00000363474 103 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 Y_RNA.363-201ENST00000365529 113 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.85□□□□□ -2.27
UFD1Q92890 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.85□□□□□ -2.27
UFD1Q92890 AC063976.4-201ENST00000421971 163 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AC104332.1-201ENST00000440471 797 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AC233266.1-201ENST00000454518 96 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 RPL39P39-201ENST00000455840 151 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AL049830.1-201ENST00000468034 425 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.85□□□□□ -2.27
UFD1Q92890 AC116353.2-201ENST00000505332 712 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 UBL5P1-201ENST00000507979 193 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 SNORD79.1-201ENST00000516069 84 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 SCARNA16.2-201ENST00000516520 172 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AL358944.1-201ENST00000528537 144 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.85□□□□□ -2.27
UFD1Q92890 AC242852.1-201ENST00000612151 96 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 PISRT1.1-201ENST00000616930 107 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AC012676.2-201ENST00000619258 186 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AC244015.1-201ENST00000622301 99 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 AC005858.4-201ENST00000623191 700 ntBASIC0.85□□□□□ -2.27
UFD1Q92890 Y_RNA.72-201ENST00000362894 103 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 Y_RNA.243-201ENST00000364481 109 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 SNORD12B-201ENST00000410433 91 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 Z98949.2-201ENST00000440996 144 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.84□□□□□ -2.27
UFD1Q92890 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.84□□□□□ -2.27
UFD1Q92890 RPL17P19-201ENST00000489069 552 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.84□□□□□ -2.27
UFD1Q92890 RNU6-358P-201ENST00000516564 75 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 RNU6-307P-201ENST00000516743 106 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 RNU6-1096P-201ENST00000517089 102 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 AC015712.3-201ENST00000559380 164 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 AC011712.1-201ENST00000588959 234 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
UFD1Q92890 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.84□□□□□ -2.27
UFD1Q92890 MIR1244-1-201ENST00000612829 85 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 AL157834.3-201ENST00000615543 103 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 MIR1244-3-201ENST00000635744 85 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 MIR1244-2-201ENST00000636449 85 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 MIR1244-4-202ENST00000636813 85 ntBASIC0.84□□□□□ -2.27
UFD1Q92890 SNORD114-7-201ENST00000362520 77 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 RNU6-1301P-201ENST00000362724 104 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 RNA5SP99-201ENST00000364020 114 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 RNU4-41P-201ENST00000364426 143 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 RNU6-1310P-201ENST00000384153 107 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 MIR764-201ENST00000390811 85 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 SNORA75.4-201ENST00000391278 119 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 RPL23AP50-201ENST00000434149 455 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 AC002429.1-201ENST00000437672 148 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.83□□□□□ -2.28
UFD1Q92890 AC087343.1-201ENST00000477341 475 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 RNU6-63P-201ENST00000516690 95 ntBASIC0.83□□□□□ -2.28
UFD1Q92890 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.83□□□□□ -2.28
UFD1Q92890 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.82□□□□□ -2.28
UFD1Q92890 RNU6-136P-201ENST00000384663 107 ntBASIC0.82□□□□□ -2.28
UFD1Q92890 RNU4-62P-201ENST00000410125 130 ntBASIC0.82□□□□□ -2.28
UFD1Q92890 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.82□□□□□ -2.28
UFD1Q92890 snoU13.23-201ENST00000458863 104 ntBASIC0.82□□□□□ -2.28
UFD1Q92890 MIR2355-201ENST00000517199 87 ntBASIC0.82□□□□□ -2.28
UFD1Q92890 RNU6-1116P-201ENST00000517269 99 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 205.9 ms