Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 Y_RNA.332-201ENST00000365271 113 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 SNORA20B-201ENST00000384220 132 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 RNU6-710P-201ENST00000410424 105 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 Y_RNA.626-201ENST00000411288 95 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 RNU2-64P-201ENST00000411315 191 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 SUMO1P2-201ENST00000452524 304 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 SNORD65B-201ENST00000459126 73 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 AC010531.2-201ENST00000465012 153 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 AC008413.1-201ENST00000511864 177 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 SNORA4.4-201ENST00000515921 135 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 SNORA70.12-201ENST00000516084 153 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 RNA5SP364-201ENST00000516938 78 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 AC025647.1-201ENST00000517879 253 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 AC027419.1-201ENST00000522976 328 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 CYCSP26-201ENST00000534107 320 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 SNORD14A-201ENST00000606526 91 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 AC009831.4-201ENST00000620744 325 ntBASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
CLIP4Q8N3C7 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 RNU6-801P-201ENST00000364087 105 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 Y_RNA.361-201ENST00000365515 120 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 RNU6-211P-201ENST00000384047 107 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 RNU1-52P-201ENST00000384190 164 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 AL121890.1-201ENST00000435457 205 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 MTCO1P44-201ENST00000441935 243 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 SNORD2.1-201ENST00000458762 69 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 AC010598.1-201ENST00000510378 103 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 RNU2-34P-201ENST00000516534 121 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 SNORA81.3-201ENST00000517283 198 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 AC136628.3-201ENST00000521868 290 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 NDUFA5P6-201ENST00000542110 379 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 AC009127.3-201ENST00000570531 403 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 AC011921.3-201ENST00000605540 361 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 AC073349.3-201ENST00000617616 186 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 uc_338.20-201ENST00000621563 178 ntBASIC2.03□□□□□ -2.08
CLIP4Q8N3C7 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.124-201ENST00000363339 93 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 RNU6-1240P-201ENST00000365155 104 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.341-201ENST00000365341 102 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.785-201ENST00000384290 109 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 RNU6-763P-201ENST00000390865 106 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 RNU6-855P-201ENST00000410395 104 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 AC009310.1-201ENST00000414414 451 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 BTF3P11-201ENST00000426582 477 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 AL135790.2-201ENST00000437701 267 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 RPL23AP7-203ENST00000449021 469 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 AL138752.1-201ENST00000452964 351 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.637-201ENST00000459424 114 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.700-201ENST00000516806 100 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 RNU6-182P-201ENST00000516970 105 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 AC022202.1-201ENST00000613515 211 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 AC009487.4-201ENST00000624969 3585 ntBASIC2.02□□□□□ -2.09
CLIP4Q8N3C7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 MIR449A-201ENST00000362113 91 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 MIR411-201ENST00000362239 96 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.29-201ENST00000362570 113 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 SNORA27.1-201ENST00000362604 124 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 RNU6-1272P-201ENST00000362776 107 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 RNU6-407P-201ENST00000365280 104 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 MIR873-201ENST00000401120 77 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 AC016909.1-201ENST00000415916 166 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 AC008134.1-201ENST00000420943 193 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 AL357134.1-201ENST00000445848 426 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 PRELID3BP1-201ENST00000457142 540 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.644-201ENST00000459006 113 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 U8.19-201ENST00000459095 133 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 COX6CP14-201ENST00000469580 174 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.674-201ENST00000516362 113 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 MIR514B-201ENST00000516774 80 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 AC024405.2-202ENST00000532731 184 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 MIR5002-201ENST00000584713 97 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 AL008718.3-201ENST00000610217 321 ntBASIC2.01□□□□□ -2.09
CLIP4Q8N3C7 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CLIP4Q8N3C7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2□□□□□ -2.09
CLIP4Q8N3C7 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2□□□□□ -2.09
CLIP4Q8N3C7 MIR340-201ENST00000362125 95 ntBASIC2□□□□□ -2.09
CLIP4Q8N3C7 SNORD114-7-201ENST00000362520 77 ntBASIC2□□□□□ -2.09
CLIP4Q8N3C7 RNU6-271P-201ENST00000363858 105 ntBASIC2□□□□□ -2.09
CLIP4Q8N3C7 SNORA3A-201ENST00000364113 130 ntBASIC2□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.310-201ENST00000365063 113 ntBASIC2□□□□□ -2.09
CLIP4Q8N3C7 Y_RNA.368-201ENST00000365547 113 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms