Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 SNORA31.24-201ENST00000517232 57 ntBASIC1.54□□□□□ -2.16
PRPF39Q86UA1 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.54□□□□□ -2.16
PRPF39Q86UA1 AC015720.1-201ENST00000565251 277 ntBASIC1.54□□□□□ -2.16
PRPF39Q86UA1 SNORA28-201ENST00000606769 126 ntBASIC1.54□□□□□ -2.16
PRPF39Q86UA1 AL078604.3-201ENST00000615580 211 ntBASIC1.54□□□□□ -2.16
PRPF39Q86UA1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.54□□□□□ -2.16
PRPF39Q86UA1 AL161722.3-201ENST00000605789 2983 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
PRPF39Q86UA1 SNORA27.1-201ENST00000362604 124 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 Y_RNA.265-201ENST00000364677 108 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 Y_RNA.267-201ENST00000364679 109 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 Y_RNA.314-201ENST00000365114 102 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 RNU6-926P-201ENST00000384075 107 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 MIR562-201ENST00000384894 95 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 MIR628-201ENST00000385229 95 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 MIR1304-201ENST00000408243 91 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 Y_RNA.592-201ENST00000410274 109 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 RNU6-321P-201ENST00000410912 106 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.53□□□□□ -2.16
PRPF39Q86UA1 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.53□□□□□ -2.16
PRPF39Q86UA1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.53□□□□□ -2.16
PRPF39Q86UA1 RNU6-408P-201ENST00000515910 100 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 RNU6-470P-201ENST00000515954 104 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.53□□□□□ -2.16
PRPF39Q86UA1 SNORD3E-202ENST00000627253 216 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 U6.115-201ENST00000636045 103 ntBASIC1.53□□□□□ -2.16
PRPF39Q86UA1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
PRPF39Q86UA1 ZNF209P-201ENST00000593450 2304 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
PRPF39Q86UA1 RNY1P10-201ENST00000363268 113 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 RNU4-13P-201ENST00000364019 141 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 Y_RNA.387-201ENST00000383918 102 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 Y_RNA.474-201ENST00000384341 102 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.52□□□□□ -2.17
PRPF39Q86UA1 MTCO3P10-201ENST00000455912 772 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 AC005840.1-201ENST00000498412 377 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 RNU1-92P-201ENST00000517017 135 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.52□□□□□ -2.17
PRPF39Q86UA1 UBE2V2P2-201ENST00000587677 504 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 AC073349.3-201ENST00000617616 186 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 AC087588.2-201ENST00000617667 426 ntBASIC1.52□□□□□ -2.17
PRPF39Q86UA1 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
PRPF39Q86UA1 MIR410-201ENST00000362222 80 ntBASIC1.51□□□□□ -2.17
PRPF39Q86UA1 Y_RNA.390-201ENST00000383932 102 ntBASIC1.51□□□□□ -2.17
PRPF39Q86UA1 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.51□□□□□ -2.17
PRPF39Q86UA1 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.51□□□□□ -2.17
PRPF39Q86UA1 SUMO1P2-201ENST00000452524 304 ntBASIC1.51□□□□□ -2.17
PRPF39Q86UA1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.51□□□□□ -2.17
PRPF39Q86UA1 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.51□□□□□ -2.17
PRPF39Q86UA1 MTND4LP32-201ENST00000636111 270 ntBASIC1.51□□□□□ -2.17
PRPF39Q86UA1 MIR1302-1-201ENST00000637932 143 ntBASIC1.51□□□□□ -2.17
PRPF39Q86UA1 AP000648.3-201ENST00000623539 4507 ntBASIC1.51□□□□□ -2.17
PRPF39Q86UA1 AL391987.6-201ENST00000305671 199 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.5□□□□□ -2.17
PRPF39Q86UA1 MIR873-201ENST00000401120 77 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 RNA5SP247-201ENST00000411181 105 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.5□□□□□ -2.17
PRPF39Q86UA1 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.5□□□□□ -2.17
PRPF39Q86UA1 AC091021.1-201ENST00000468051 388 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 RNA5SP61-201ENST00000516453 100 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.5□□□□□ -2.17
PRPF39Q86UA1 AL161670.1-201ENST00000554348 137 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 AL390123.1-201ENST00000603216 237 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 PRR13P7-201ENST00000605538 430 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 AL513423.1-201ENST00000621695 132 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 AC127459.3-201ENST00000624328 466 ntBASIC1.5□□□□□ -2.17
PRPF39Q86UA1 SNORA72.1-201ENST00000363485 129 ntBASIC1.49□□□□□ -2.17
PRPF39Q86UA1 SNORA7.1-201ENST00000363750 139 ntBASIC1.49□□□□□ -2.17
PRPF39Q86UA1 RNY3P11-201ENST00000364153 102 ntBASIC1.49□□□□□ -2.17
PRPF39Q86UA1 FCF1P4-201ENST00000448326 183 ntBASIC1.49□□□□□ -2.17
PRPF39Q86UA1 RPS29P23-201ENST00000458635 123 ntBASIC1.49□□□□□ -2.17
PRPF39Q86UA1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.49□□□□□ -2.17
PRPF39Q86UA1 AC023442.1-201ENST00000531247 422 ntBASIC1.49□□□□□ -2.17
PRPF39Q86UA1 AP002001.1-203ENST00000534002 267 ntBASIC1.49□□□□□ -2.17
PRPF39Q86UA1 AC006380.1-201ENST00000603598 186 ntBASIC1.49□□□□□ -2.17
PRPF39Q86UA1 RNU6-454P-201ENST00000364292 107 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 RNU6-1283P-201ENST00000365314 105 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 AL354695.1-201ENST00000427935 228 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 AC099799.1-201ENST00000439809 192 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 AL137792.2-201ENST00000443484 235 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 AC233266.1-201ENST00000454518 96 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 Y_RNA.675-201ENST00000516389 149 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 RBM11P1-201ENST00000604951 799 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 AC242852.1-201ENST00000612151 96 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 AC004467.1-201ENST00000615678 330 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 AC244015.1-201ENST00000622301 99 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 AC106754.2-201ENST00000623006 233 ntBASIC1.48□□□□□ -2.17
PRPF39Q86UA1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
PRPF39Q86UA1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.48□□□□□ -2.17
PRPF39Q86UA1 MIR26B-201ENST00000362251 77 ntBASIC1.47□□□□□ -2.17
PRPF39Q86UA1 RNU6-490P-201ENST00000362985 107 ntBASIC1.47□□□□□ -2.17
PRPF39Q86UA1 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.47□□□□□ -2.17
PRPF39Q86UA1 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.47□□□□□ -2.17
PRPF39Q86UA1 MRPS18CP6-201ENST00000423587 223 ntBASIC1.47□□□□□ -2.17
PRPF39Q86UA1 AC093019.1-201ENST00000443135 252 ntBASIC1.47□□□□□ -2.17
PRPF39Q86UA1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.47□□□□□ -2.17
PRPF39Q86UA1 RNU6-1291P-201ENST00000516591 104 ntBASIC1.47□□□□□ -2.17
PRPF39Q86UA1 RN7SKP88-201ENST00000516847 250 ntBASIC1.47□□□□□ -2.17
PRPF39Q86UA1 RNU6-341P-201ENST00000516973 96 ntBASIC1.47□□□□□ -2.17
PRPF39Q86UA1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms