Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR7-3-201ENST00000384898 110 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 MIR891A-201ENST00000401237 79 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 CYCSP49-201ENST00000420810 319 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 AC018634.1-201ENST00000437554 401 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 AC006028.1-201ENST00000438379 402 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 AL353689.1-201ENST00000438895 199 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 RNU5E-3P-201ENST00000515913 68 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 RNU7-99P-201ENST00000516271 62 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 RNU6-504P-201ENST00000516568 104 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 AL353149.1-201ENST00000610667 244 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 MIR7112-201ENST00000616126 65 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 snoU2-30.2-201ENST00000362805 70 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 Y_RNA.66-201ENST00000362862 102 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 SNORD56.3-201ENST00000363507 71 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 MIR23B-201ENST00000384832 97 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 RNA5SP293-201ENST00000410527 113 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 RNA5SP120-201ENST00000410900 112 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 AC023141.11-201ENST00000508864 202 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 SNORA64.4-201ENST00000516632 81 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 RNA5SP380-201ENST00000517190 98 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 AC018630.2-201ENST00000534866 2403 ntBASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
UBE3DQ7Z6J8 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 SNORD58C-201ENST00000365223 64 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 RNU6-1292P-201ENST00000383856 107 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 MIR561-201ENST00000385216 97 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 AL513477.1-202ENST00000417061 214 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 PRSS3P4-201ENST00000453323 162 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 RPS26P45-201ENST00000471748 340 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 HMGN1P7-201ENST00000491722 313 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 RNU2-60P-201ENST00000517290 128 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 MIR3616-201ENST00000584070 92 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 uc_338.25-201ENST00000613756 156 ntBASIC3.03□□□□□ -1.92
UBE3DQ7Z6J8 SNORA63.1-201ENST00000362493 131 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 Y_RNA.52-201ENST00000362760 96 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 Y_RNA.346-201ENST00000365385 112 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 SNORD24-201ENST00000383884 75 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 Y_RNA.486-201ENST00000384398 107 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 SNORA48.8-201ENST00000391324 134 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 AC060773.1-201ENST00000421698 310 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 HMGN2P34-201ENST00000437647 269 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 RNU6-1061P-201ENST00000516530 99 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 Y_RNA.714-201ENST00000517065 90 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 AC007751.1-201ENST00000529260 376 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 AC073413.2-201ENST00000604332 360 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 MIR92B-201ENST00000607575 96 ntBASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.02□□□□□ -1.93
UBE3DQ7Z6J8 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 MIR340-201ENST00000362125 95 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 SNORA63.4-201ENST00000362763 126 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 RNU1-23P-201ENST00000363361 144 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 RNA5SP72-201ENST00000364442 117 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 MIR515-2-201ENST00000384883 83 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 MIR515-1-201ENST00000384884 83 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 RNU2-48P-201ENST00000410694 191 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 SRIP3-201ENST00000413200 219 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 AC063976.4-201ENST00000421971 163 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 AF228730.3-201ENST00000436691 102 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 AC011406.1-201ENST00000512440 370 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 RNU6-991P-201ENST00000516168 107 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 SNORD33.1-201ENST00000516213 88 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 MIR5680-201ENST00000577577 84 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 AL359075.3-201ENST00000613288 217 ntBASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
UBE3DQ7Z6J8 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3□□□□□ -1.93
UBE3DQ7Z6J8 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
UBE3DQ7Z6J8 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3□□□□□ -1.93
UBE3DQ7Z6J8 MIR34B-201ENST00000385076 84 ntBASIC3□□□□□ -1.93
UBE3DQ7Z6J8 MIRLET7F2-201ENST00000385277 83 ntBASIC3□□□□□ -1.93
UBE3DQ7Z6J8 MIR548A3-201ENST00000385297 97 ntBASIC3□□□□□ -1.93
UBE3DQ7Z6J8 RPS29P12-201ENST00000460178 152 ntBASIC3□□□□□ -1.93
UBE3DQ7Z6J8 RN7SL601P-201ENST00000471221 293 ntBASIC3□□□□□ -1.93
UBE3DQ7Z6J8 RNU6-113P-201ENST00000516653 101 ntBASIC3□□□□□ -1.93
UBE3DQ7Z6J8 RNU6-341P-201ENST00000516973 96 ntBASIC3□□□□□ -1.93
UBE3DQ7Z6J8 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3□□□□□ -1.93
UBE3DQ7Z6J8 AC004832.5-201ENST00000608677 401 ntBASIC3□□□□□ -1.93
UBE3DQ7Z6J8 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3□□□□□ -1.93
UBE3DQ7Z6J8 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3□□□□□ -1.93
UBE3DQ7Z6J8 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
UBE3DQ7Z6J8 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
UBE3DQ7Z6J8 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
UBE3DQ7Z6J8 RNA5SP383-201ENST00000362934 120 ntBASIC2.99□□□□□ -1.93
UBE3DQ7Z6J8 RNU6-743P-201ENST00000364151 106 ntBASIC2.99□□□□□ -1.93
UBE3DQ7Z6J8 SNORA7.4-201ENST00000384249 137 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 201.4 ms