Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-341P-201ENST00000516973 96 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 SNORA70.22-201ENST00000517160 124 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 AF235103.2-201ENST00000525753 346 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 AP002001.1-203ENST00000534002 267 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 AC090049.2-201ENST00000550377 109 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 AC009229.3-201ENST00000608056 282 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 AC005592.1-201ENST00000566527 1640 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 MIR410-201ENST00000362222 80 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.6-201ENST00000362350 114 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.164-201ENST00000363709 102 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 RNU4-38P-201ENST00000364472 129 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 RNU6-392P-201ENST00000364926 101 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.358-201ENST00000365491 99 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.498-201ENST00000384460 102 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 RNU6-376P-201ENST00000384731 106 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 MIR562-201ENST00000384894 95 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 UBE2V1P7-201ENST00000446395 340 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 AC093850.1-201ENST00000454121 251 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 COX6CP14-201ENST00000469580 174 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 AC048334.1-201ENST00000477975 159 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 RPL7P42-201ENST00000481005 679 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 RNU6-917P-201ENST00000516294 104 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 RN7SKP49-201ENST00000516675 260 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 RNU7-28P-201ENST00000516759 62 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 AC022868.1-201ENST00000517767 391 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 AC080078.2-201ENST00000603766 501 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 AC007014.2-201ENST00000615581 479 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 AC012676.2-201ENST00000619258 186 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 U6.115-201ENST00000636045 103 ntBASIC1.08□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.339-201ENST00000365325 102 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 RNU6-318P-201ENST00000384283 103 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 RNU6-601P-201ENST00000384540 107 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 RNU6-910P-201ENST00000390844 107 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 RNU6-1054P-201ENST00000411293 104 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 AL137792.2-201ENST00000443484 235 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 HMGN1P7-201ENST00000491722 313 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 UBL5P1-201ENST00000507979 193 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 RNU6-1291P-201ENST00000516591 104 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 AP002004.2-201ENST00000531656 154 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 MIR4781-201ENST00000585250 76 ntBASIC1.07□□□□□ -2.24
CCDC40Q4G0X9 RNU4-79P-201ENST00000362764 141 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 RNY1P10-201ENST00000363268 113 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 RNU6-454P-201ENST00000364292 107 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 MTND3P10-201ENST00000450967 341 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 AC107399.1-201ENST00000451226 265 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 RNU6-625P-201ENST00000459412 107 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 AC069439.1-201ENST00000494739 167 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 SNORA31.4-201ENST00000516049 129 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 MIR3674-201ENST00000636576 68 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 AC073869.6-201ENST00000640656 341 ntBASIC1.06□□□□□ -2.24
CCDC40Q4G0X9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 AL391516.1-201ENST00000554380 2449 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 MIR337-201ENST00000362281 93 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.4-201ENST00000362333 112 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.124-201ENST00000363339 93 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 RNU6-117P-201ENST00000365415 107 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.404-201ENST00000383978 102 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 RNA5SP482-201ENST00000391269 118 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 MIR873-201ENST00000401120 77 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 AL451046.2-201ENST00000403074 277 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 RNU5A-5P-201ENST00000411054 116 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 AC092423.1-201ENST00000430165 186 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 MTND1P34-201ENST00000438556 671 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 AC245047.7-201ENST00000440265 293 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 AC022493.2-201ENST00000506122 481 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 SNORA40.9-201ENST00000515895 93 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.655-201ENST00000515919 96 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 RNU7-12P-201ENST00000516030 62 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 RNU6-1278P-201ENST00000516130 107 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 RNU6-947P-201ENST00000516264 106 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 AC005828.6-201ENST00000606610 232 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 AC127459.3-201ENST00000624328 466 ntBASIC1.05□□□□□ -2.24
CCDC40Q4G0X9 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 MIRLET7C-201ENST00000362160 84 ntBASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.88-201ENST00000363029 99 ntBASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 SNORD114-27-201ENST00000363766 70 ntBASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 RNU6-1187P-201ENST00000364771 110 ntBASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 SNORA2.2-201ENST00000365473 135 ntBASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 Y_RNA.482-201ENST00000384377 111 ntBASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 RNU6-322P-201ENST00000516010 103 ntBASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 AL117336.2-201ENST00000602435 335 ntBASIC1.04□□□□□ -2.24
CCDC40Q4G0X9 MIR19B1-201ENST00000384829 87 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms