Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 AC113410.1-201ENST00000505029 247 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 AC046134.1-201ENST00000514454 666 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 RNU6-1114P-201ENST00000516022 107 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 RNU6-405P-201ENST00000516637 110 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 RNU6-256P-201ENST00000516747 97 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 RNU6-1116P-201ENST00000517269 99 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 AC093023.1-201ENST00000547375 507 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 MIR3611-201ENST00000584484 83 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 MIR3192-201ENST00000584920 77 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 AL512605.2-201ENST00000592972 256 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 AC242852.1-201ENST00000612151 96 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 MIR6513-201ENST00000621188 64 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 AC244015.1-201ENST00000622301 99 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 AC124864.2-201ENST00000624736 186 ntBASIC0.46□□□□□ -2.34
ZNF404Q494X3 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.45□□□□□ -2.34
ZNF404Q494X3 RNA5SP264-201ENST00000363115 107 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 Y_RNA.135-201ENST00000363439 95 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 RNU6-833P-201ENST00000363486 107 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 Y_RNA.336-201ENST00000365307 109 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 RNU6-1335P-201ENST00000365426 107 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.45□□□□□ -2.34
ZNF404Q494X3 RNU6-1264P-201ENST00000383891 107 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 Y_RNA.405-201ENST00000383979 100 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 Y_RNA.451-201ENST00000384200 100 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 Y_RNA.524-201ENST00000384564 100 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 Y_RNA.533-201ENST00000384596 114 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 RNU6-306P-201ENST00000384617 107 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 Y_RNA.561-201ENST00000384694 100 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 MIR520G-201ENST00000385064 90 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 RNU1-139P-201ENST00000391307 165 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 ZNF885P-201ENST00000420174 1098 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 USMG5P1-201ENST00000425964 177 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 USP9YP16-201ENST00000430287 407 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 USP9YP23-201ENST00000455085 407 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 RNU7-66P-201ENST00000459469 62 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 HMGN2P26-201ENST00000463169 339 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.45□□□□□ -2.34
ZNF404Q494X3 CYCTP-201ENST00000504253 315 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 RNU6-1281P-201ENST00000516223 105 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 AL162413.1-201ENST00000603198 110 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 MIR6515-201ENST00000619843 57 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 MIR3974-201ENST00000637126 96 ntBASIC0.45□□□□□ -2.34
ZNF404Q494X3 MIR103A2-201ENST00000362154 78 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 RNU6-222P-201ENST00000362438 107 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 Y_RNA.212-201ENST00000364177 102 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 RNU4-41P-201ENST00000364426 143 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 RNU6-281P-201ENST00000384212 103 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 RNU5A-5P-201ENST00000411054 116 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AC092628.1-201ENST00000436250 252 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 Z98949.2-201ENST00000440996 144 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AC093019.1-201ENST00000443135 252 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AL137792.2-201ENST00000443484 235 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 UQCRBP2-201ENST00000447827 297 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 RNU6-1132P-201ENST00000459214 107 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AC098869.1-201ENST00000481627 292 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 RNU4-54P-201ENST00000516428 129 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 RNA5SP121-201ENST00000516537 101 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AC023827.1-201ENST00000569247 97 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.44□□□□□ -2.34
ZNF404Q494X3 MIR4273-201ENST00000582824 84 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AC120024.3-201ENST00000603167 156 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 RN7SKP299-201ENST00000606679 301 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AC007014.2-201ENST00000615581 479 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 AP000770.2-201ENST00000623694 100 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.44□□□□□ -2.34
ZNF404Q494X3 AC073544.1-201ENST00000600110 1595 ntBASIC0.44□□□□□ -2.34
ZNF404Q494X3 ZNF299P-201ENST00000406845 1804 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 Y_RNA.118-201ENST00000363300 101 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 RNA5SP499-201ENST00000363982 119 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 RNU6-259P-201ENST00000383999 107 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 RNU6-163P-201ENST00000384396 106 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 RNU6-1001P-201ENST00000411265 100 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.43□□□□□ -2.34
ZNF404Q494X3 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.43□□□□□ -2.34
ZNF404Q494X3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.43□□□□□ -2.34
ZNF404Q494X3 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.43□□□□□ -2.34
ZNF404Q494X3 Y_RNA.706-201ENST00000516933 99 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 RNU6-1096P-201ENST00000517089 102 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 AL358944.1-201ENST00000528537 144 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
ZNF404Q494X3 AC025627.3-201ENST00000582078 182 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 MIR3672-201ENST00000584290 82 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 AC131055.1-201ENST00000584626 316 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 AC127459.3-201ENST00000624328 466 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 AL008636.1-201ENST00000625038 1018 ntBASIC0.43□□□□□ -2.34
ZNF404Q494X3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
ZNF404Q494X3 RNY1-201ENST00000364228 113 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 Y_RNA.256-201ENST00000364594 104 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 Y_RNA.490-201ENST00000384413 102 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
ZNF404Q494X3 SNORD89-201ENST00000390981 114 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 SNORD99-201ENST00000408612 74 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 PIGPP3-201ENST00000425307 415 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 AL162725.1-201ENST00000435405 301 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 U7.7-201ENST00000459276 60 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.42□□□□□ -2.34
ZNF404Q494X3 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.42□□□□□ -2.34
ZNF404Q494X3 RNA5SP436-201ENST00000516020 115 ntBASIC0.42□□□□□ -2.34
ZNF404Q494X3 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms