Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC025647.1-201ENST00000517879 253 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 AL442163.3-201ENST00000554110 156 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.47□□□□□ -2.17
TNFRSF4P43489 AC138305.3-201ENST00000624988 240 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 MIR4272-201ENST00000635924 64 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 AC100821.1-201ENST00000523153 2479 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 RNU6-1240P-201ENST00000365155 104 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 Y_RNA.394-201ENST00000383942 103 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 RNY3P4-201ENST00000384428 101 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 SNORD78.2-201ENST00000391076 69 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.46□□□□□ -2.18
TNFRSF4P43489 COX6CP10-201ENST00000416832 224 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.46□□□□□ -2.18
TNFRSF4P43489 TOMM22P2-201ENST00000430735 237 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 FCF1P4-201ENST00000448326 183 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 AC024995.1-201ENST00000523014 93 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 AC018448.1-201ENST00000552843 316 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 MIR4422-201ENST00000581938 83 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.46□□□□□ -2.18
TNFRSF4P43489 AL157834.3-201ENST00000615543 103 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 AC007485.1-201ENST00000616755 206 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 AL138825.1-201ENST00000618587 192 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 AL353770.2-201ENST00000620024 78 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 uc_338.22-201ENST00000622722 187 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.46□□□□□ -2.18
TNFRSF4P43489 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
TNFRSF4P43489 Y_RNA.287-201ENST00000364853 94 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 RNU1-115P-201ENST00000365329 160 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 SNORD42.2-201ENST00000365570 69 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 RNU6-1264P-201ENST00000383891 107 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 RNU6-708P-201ENST00000384217 107 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 RNY1P14-201ENST00000384426 108 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 MIR1185-2-201ENST00000408687 86 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 ELOCP21-201ENST00000412558 336 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 MTCO3P19-201ENST00000415864 321 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 AC016909.1-201ENST00000415916 166 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 AC018865.2-201ENST00000423631 129 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 MTCO2P12-201ENST00000427426 682 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 RAB28P5-201ENST00000427490 651 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 SNRPGP13-201ENST00000442212 177 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 AC073910.1-201ENST00000445047 438 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 snoU13.27-201ENST00000459278 104 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 AC074133.1-201ENST00000515696 183 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 RNU6-408P-201ENST00000515910 100 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 RNU6-911P-201ENST00000516523 104 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 RN7SKP295-201ENST00000517264 153 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.45□□□□□ -2.18
TNFRSF4P43489 SNORA77B-201ENST00000578179 125 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 AC091925.1-201ENST00000623204 462 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 AL606534.2-204ENST00000635008 178 ntBASIC1.45□□□□□ -2.18
TNFRSF4P43489 ICE2P2-201ENST00000483823 2787 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
TNFRSF4P43489 Y_RNA.27-201ENST00000362540 103 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 Y_RNA.80-201ENST00000362996 102 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 Y_RNA.112-201ENST00000363250 102 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 SNORA33-201ENST00000363664 130 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 Y_RNA.485-201ENST00000384395 102 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
TNFRSF4P43489 AL160004.2-201ENST00000432935 350 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 AL137792.2-201ENST00000443484 235 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 Y_RNA.639-201ENST00000458981 102 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 RNU4-77P-201ENST00000516692 156 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 AC027419.1-201ENST00000522976 328 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.44□□□□□ -2.18
TNFRSF4P43489 MIR5188-201ENST00000583467 113 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 MIR8063-201ENST00000621930 81 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 U6.92-201ENST00000636464 89 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.44□□□□□ -2.18
TNFRSF4P43489 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
TNFRSF4P43489 Y_RNA.31-201ENST00000362574 102 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 Y_RNA.395-201ENST00000383945 109 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 RNU1-78P-201ENST00000391248 165 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 RNA5SP467-201ENST00000391274 118 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 RNA5SP475-201ENST00000410568 110 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 MCFD2P1-201ENST00000417812 300 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.43□□□□□ -2.18
TNFRSF4P43489 MTND1P14-201ENST00000427400 950 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 RNU1-142P-201ENST00000516682 145 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.43□□□□□ -2.18
TNFRSF4P43489 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.43□□□□□ -2.18
TNFRSF4P43489 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.43□□□□□ -2.18
TNFRSF4P43489 MIR4709-201ENST00000577272 72 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 RPS29P30-201ENST00000600975 111 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 AL359075.3-201ENST00000613288 217 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 AC011476.5-201ENST00000615594 130 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 MIR3674-201ENST00000636576 68 ntBASIC1.43□□□□□ -2.18
TNFRSF4P43489 Y_RNA.138-201ENST00000363462 102 ntBASIC1.42□□□□□ -2.18
TNFRSF4P43489 Y_RNA.269-201ENST00000364685 89 ntBASIC1.42□□□□□ -2.18
TNFRSF4P43489 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.42□□□□□ -2.18
TNFRSF4P43489 Y_RNA.631-201ENST00000459607 101 ntBASIC1.42□□□□□ -2.18
TNFRSF4P43489 RNU6-970P-201ENST00000516312 107 ntBASIC1.42□□□□□ -2.18
TNFRSF4P43489 AC023442.1-201ENST00000531247 422 ntBASIC1.42□□□□□ -2.18
TNFRSF4P43489 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.42□□□□□ -2.18
TNFRSF4P43489 MIR4659A-201ENST00000580269 81 ntBASIC1.42□□□□□ -2.18
TNFRSF4P43489 SNORD58B-201ENST00000607313 66 ntBASIC1.42□□□□□ -2.18
TNFRSF4P43489 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.42□□□□□ -2.18
TNFRSF4P43489 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.41□□□□□ -2.18
TNFRSF4P43489 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms