Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 Y_RNA.216-201ENST00000364205 93 ntBASIC1.77□□□□□ -2.13
MSH2P43246 MIR583-201ENST00000384846 75 ntBASIC1.77□□□□□ -2.13
MSH2P43246 MRPL42P3-201ENST00000401492 326 ntBASIC1.77□□□□□ -2.13
MSH2P43246 RNU6-1186P-201ENST00000410429 97 ntBASIC1.77□□□□□ -2.13
MSH2P43246 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.77□□□□□ -2.13
MSH2P43246 HSPE1P9-201ENST00000440046 311 ntBASIC1.77□□□□□ -2.13
MSH2P43246 AC003989.2-201ENST00000440224 169 ntBASIC1.77□□□□□ -2.13
MSH2P43246 RPEP5-201ENST00000441137 268 ntBASIC1.77□□□□□ -2.13
MSH2P43246 SUMO1P2-201ENST00000452524 304 ntBASIC1.77□□□□□ -2.13
MSH2P43246 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH2P43246 snoU13.9-201ENST00000458927 103 ntBASIC1.77□□□□□ -2.13
MSH2P43246 U8.20-201ENST00000459445 131 ntBASIC1.77□□□□□ -2.13
MSH2P43246 RPS27P22-201ENST00000478056 241 ntBASIC1.77□□□□□ -2.13
MSH2P43246 AL163195.1-201ENST00000496941 348 ntBASIC1.77□□□□□ -2.13
MSH2P43246 RNU6-1153P-201ENST00000516760 105 ntBASIC1.77□□□□□ -2.13
MSH2P43246 RNA5SP437-201ENST00000517249 129 ntBASIC1.77□□□□□ -2.13
MSH2P43246 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.77□□□□□ -2.13
MSH2P43246 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.77□□□□□ -2.13
MSH2P43246 DEFB122-202ENST00000569013 197 ntBASIC1.77□□□□□ -2.13
MSH2P43246 AC044792.1-201ENST00000593294 196 ntBASIC1.77□□□□□ -2.13
MSH2P43246 AC104695.3-201ENST00000604052 296 ntBASIC1.77□□□□□ -2.13
MSH2P43246 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.77□□□□□ -2.13
MSH2P43246 SNORD115-30-201ENST00000364117 82 ntBASIC1.76□□□□□ -2.13
MSH2P43246 RNU6-338P-201ENST00000383888 105 ntBASIC1.76□□□□□ -2.13
MSH2P43246 Y_RNA.471-201ENST00000384312 102 ntBASIC1.76□□□□□ -2.13
MSH2P43246 MIR1267-201ENST00000408723 78 ntBASIC1.76□□□□□ -2.13
MSH2P43246 RNU2-54P-201ENST00000410299 190 ntBASIC1.76□□□□□ -2.13
MSH2P43246 AC005002.2-201ENST00000438228 269 ntBASIC1.76□□□□□ -2.13
MSH2P43246 RPS26P45-201ENST00000471748 340 ntBASIC1.76□□□□□ -2.13
MSH2P43246 RNU7-99P-201ENST00000516271 62 ntBASIC1.76□□□□□ -2.13
MSH2P43246 AC022616.4-201ENST00000522985 181 ntBASIC1.76□□□□□ -2.13
MSH2P43246 AC110588.1-201ENST00000559699 137 ntBASIC1.76□□□□□ -2.13
MSH2P43246 MIR4423-201ENST00000580922 80 ntBASIC1.76□□□□□ -2.13
MSH2P43246 AL356055.1-201ENST00000602528 446 ntBASIC1.76□□□□□ -2.13
MSH2P43246 AC006380.1-201ENST00000603598 186 ntBASIC1.76□□□□□ -2.13
MSH2P43246 AC124312.5-201ENST00000604451 268 ntBASIC1.76□□□□□ -2.13
MSH2P43246 AL021879.1-201ENST00000611756 288 ntBASIC1.76□□□□□ -2.13
MSH2P43246 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
MSH2P43246 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
MSH2P43246 RNU6-271P-201ENST00000363858 105 ntBASIC1.75□□□□□ -2.13
MSH2P43246 RNU6-407P-201ENST00000365280 104 ntBASIC1.75□□□□□ -2.13
MSH2P43246 Y_RNA.361-201ENST00000365515 120 ntBASIC1.75□□□□□ -2.13
MSH2P43246 RNU6-1227P-201ENST00000383981 107 ntBASIC1.75□□□□□ -2.13
MSH2P43246 Y_RNA.439-201ENST00000384119 94 ntBASIC1.75□□□□□ -2.13
MSH2P43246 Y_RNA.446-201ENST00000384178 104 ntBASIC1.75□□□□□ -2.13
MSH2P43246 Y_RNA.570-201ENST00000384750 101 ntBASIC1.75□□□□□ -2.13
MSH2P43246 RNU6-823P-201ENST00000391042 103 ntBASIC1.75□□□□□ -2.13
MSH2P43246 MIR873-201ENST00000401120 77 ntBASIC1.75□□□□□ -2.13
MSH2P43246 RNU6-1199P-201ENST00000411249 104 ntBASIC1.75□□□□□ -2.13
MSH2P43246 AC005534.2-201ENST00000431047 433 ntBASIC1.75□□□□□ -2.13
MSH2P43246 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.75□□□□□ -2.13
MSH2P43246 RNA5SP20-201ENST00000515976 84 ntBASIC1.75□□□□□ -2.13
MSH2P43246 Y_RNA.713-201ENST00000517013 96 ntBASIC1.75□□□□□ -2.13
MSH2P43246 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.75□□□□□ -2.13
MSH2P43246 AC022441.3-201ENST00000605737 136 ntBASIC1.75□□□□□ -2.13
MSH2P43246 PART1_1.1-201ENST00000611761 217 ntBASIC1.75□□□□□ -2.13
MSH2P43246 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.75□□□□□ -2.13
MSH2P43246 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
MSH2P43246 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
MSH2P43246 SNORD114-7-201ENST00000362520 77 ntBASIC1.74□□□□□ -2.13
MSH2P43246 RNU1-22P-201ENST00000363334 158 ntBASIC1.74□□□□□ -2.13
MSH2P43246 Y_RNA.158-201ENST00000363651 101 ntBASIC1.74□□□□□ -2.13
MSH2P43246 Y_RNA.202-201ENST00000364083 110 ntBASIC1.74□□□□□ -2.13
MSH2P43246 RNU6-1175P-201ENST00000365200 107 ntBASIC1.74□□□□□ -2.13
MSH2P43246 AC117470.1-201ENST00000381974 330 ntBASIC1.74□□□□□ -2.13
MSH2P43246 Y_RNA.462-201ENST00000384268 102 ntBASIC1.74□□□□□ -2.13
MSH2P43246 Y_RNA.551-201ENST00000384661 102 ntBASIC1.74□□□□□ -2.13
MSH2P43246 SNORA40.18-201ENST00000391200 128 ntBASIC1.74□□□□□ -2.13
MSH2P43246 MIR1289-2-201ENST00000408360 111 ntBASIC1.74□□□□□ -2.13
MSH2P43246 RNU6-130P-201ENST00000411112 103 ntBASIC1.74□□□□□ -2.13
MSH2P43246 AC073910.1-201ENST00000445047 438 ntBASIC1.74□□□□□ -2.13
MSH2P43246 RPS29P11-201ENST00000496507 171 ntBASIC1.74□□□□□ -2.13
MSH2P43246 AC097462.1-201ENST00000514125 324 ntBASIC1.74□□□□□ -2.13
MSH2P43246 RNU6-966P-201ENST00000516479 104 ntBASIC1.74□□□□□ -2.13
MSH2P43246 Y_RNA.721-201ENST00000517207 102 ntBASIC1.74□□□□□ -2.13
MSH2P43246 Y_RNA.124-201ENST00000363339 93 ntBASIC1.73□□□□□ -2.13
MSH2P43246 RNU6-450P-201ENST00000364654 107 ntBASIC1.73□□□□□ -2.13
MSH2P43246 SNORA63.7-201ENST00000365579 123 ntBASIC1.73□□□□□ -2.13
MSH2P43246 Y_RNA.389-201ENST00000383924 113 ntBASIC1.73□□□□□ -2.13
MSH2P43246 RNU6-101P-201ENST00000410323 104 ntBASIC1.73□□□□□ -2.13
MSH2P43246 RNU5A-5P-201ENST00000411054 116 ntBASIC1.73□□□□□ -2.13
MSH2P43246 HSPE1P24-201ENST00000450782 238 ntBASIC1.73□□□□□ -2.13
MSH2P43246 RNU6-155P-201ENST00000516347 100 ntBASIC1.73□□□□□ -2.13
MSH2P43246 RNA5SP481-201ENST00000516814 122 ntBASIC1.73□□□□□ -2.13
MSH2P43246 Y_RNA.715-201ENST00000517082 110 ntBASIC1.73□□□□□ -2.13
MSH2P43246 RNU7-172P-201ENST00000517125 64 ntBASIC1.73□□□□□ -2.13
MSH2P43246 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
MSH2P43246 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.73□□□□□ -2.13
MSH2P43246 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
MSH2P43246 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.72□□□□□ -2.13
MSH2P43246 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
MSH2P43246 Y_RNA.143-201ENST00000363520 106 ntBASIC1.72□□□□□ -2.13
MSH2P43246 SNORD63-201ENST00000384262 68 ntBASIC1.72□□□□□ -2.13
MSH2P43246 MIR504-201ENST00000385065 83 ntBASIC1.72□□□□□ -2.13
MSH2P43246 MIR9-3-201ENST00000385084 90 ntBASIC1.72□□□□□ -2.13
MSH2P43246 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
MSH2P43246 RNA5SP109-201ENST00000391010 116 ntBASIC1.72□□□□□ -2.13
MSH2P43246 AL031003.1-201ENST00000404229 172 ntBASIC1.72□□□□□ -2.13
MSH2P43246 AL390729.2-201ENST00000416137 156 ntBASIC1.72□□□□□ -2.13
MSH2P43246 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms