Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AL132765.2-201ENST00000610812 351 ntBASIC0.89□□□□□ -2.27
SCN1AP35498 AC010999.1-201ENST00000611856 324 ntBASIC0.89□□□□□ -2.27
SCN1AP35498 U6atac.1-201ENST00000616025 117 ntBASIC0.89□□□□□ -2.27
SCN1AP35498 AC008873.1-201ENST00000625051 138 ntBASIC0.89□□□□□ -2.27
SCN1AP35498 AC073544.1-201ENST00000600110 1595 ntBASIC0.89□□□□□ -2.27
SCN1AP35498 MIR410-201ENST00000362222 80 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 SNORD114-2-201ENST00000363953 78 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 Y_RNA.279-201ENST00000364763 95 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 RNU6-342P-201ENST00000384521 104 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 Y_RNA.577-201ENST00000384794 101 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 MT-TL1-201ENST00000386347 75 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 MRPL35P1-201ENST00000404272 572 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 AC004941.2-201ENST00000427009 228 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 Y_RNA.635-201ENST00000459041 101 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 MIR1244-1-201ENST00000612829 85 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 AC027335.2-201ENST00000624030 375 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 MIR1244-3-201ENST00000635744 85 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 MIR1244-2-201ENST00000636449 85 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 MIR1244-4-202ENST00000636813 85 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 SNORD114-7-201ENST00000362520 77 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 Y_RNA.67-201ENST00000362870 100 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 RNU6-961P-201ENST00000363893 105 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 TOMM22P2-201ENST00000430735 237 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 AC092989.1-201ENST00000481235 277 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.88□□□□□ -2.27
SCN1AP35498 AC006380.1-201ENST00000603598 186 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 MIR6779-201ENST00000617283 64 ntBASIC0.88□□□□□ -2.27
SCN1AP35498 RNU6-222P-201ENST00000362438 107 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 SNORA27.1-201ENST00000362604 124 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 U3.8-201ENST00000363675 217 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 Y_RNA.505-201ENST00000384489 102 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 RNU7-87P-201ENST00000459343 62 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 SNORA40.9-201ENST00000515895 93 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 Y_RNA.708-201ENST00000516950 96 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 AC018448.1-201ENST00000552843 316 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 AL078603.1-201ENST00000603824 313 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 AL357075.2-201ENST00000614906 189 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 AC022306.2-201ENST00000617563 647 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 MIR6788-201ENST00000618842 66 ntBASIC0.87□□□□□ -2.27
SCN1AP35498 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
SCN1AP35498 Y_RNA.86-201ENST00000363020 111 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 Y_RNA.248-201ENST00000364501 109 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 Y_RNA.405-201ENST00000383979 100 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 Y_RNA.451-201ENST00000384200 100 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 Y_RNA.524-201ENST00000384564 100 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RNU6-306P-201ENST00000384617 107 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 Y_RNA.561-201ENST00000384694 100 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 MIR329-1-201ENST00000385028 80 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RNA5SP475-201ENST00000410568 110 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 AL135790.2-201ENST00000437701 267 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RNU6-625P-201ENST00000459412 107 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 AL049830.1-201ENST00000468034 425 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RPL30P7-201ENST00000479312 323 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 SNORA77B-201ENST00000578179 125 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 Y_RNA.36-201ENST00000362602 112 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 SNORD114-26-201ENST00000363543 72 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 Y_RNA.166-201ENST00000363730 102 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RNU6-324P-201ENST00000363957 106 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RNU6-439P-201ENST00000384188 106 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RNU6-331P-201ENST00000384724 107 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RNU6-1001P-201ENST00000411265 100 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.86□□□□□ -2.27
SCN1AP35498 MIR2053-201ENST00000459295 91 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 SNORD111.1-201ENST00000516421 86 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.86□□□□□ -2.27
SCN1AP35498 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
SCN1AP35498 GHRLOS.1-201ENST00000610995 70 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 MIR8063-201ENST00000621930 81 ntBASIC0.86□□□□□ -2.27
SCN1AP35498 RNA5SP259-201ENST00000365541 109 ntBASIC0.85□□□□□ -2.27
SCN1AP35498 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.85□□□□□ -2.27
SCN1AP35498 Y_RNA.557-201ENST00000384680 107 ntBASIC0.85□□□□□ -2.27
SCN1AP35498 MIR520E-201ENST00000384867 87 ntBASIC0.85□□□□□ -2.27
SCN1AP35498 SNORD12B-201ENST00000410433 91 ntBASIC0.85□□□□□ -2.27
SCN1AP35498 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.85□□□□□ -2.27
SCN1AP35498 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.85□□□□□ -2.27
SCN1AP35498 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.85□□□□□ -2.27
SCN1AP35498 AC027419.1-201ENST00000522976 328 ntBASIC0.85□□□□□ -2.27
SCN1AP35498 AC005730.3-201ENST00000583067 366 ntBASIC0.85□□□□□ -2.27
SCN1AP35498 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.85□□□□□ -2.27
SCN1AP35498 SNORA33-201ENST00000363664 130 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 Y_RNA.450-201ENST00000384198 113 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 RNU6-318P-201ENST00000384283 103 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 AL355796.1-201ENST00000406706 323 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 RNU2-54P-201ENST00000410299 190 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 Y_RNA.599-201ENST00000410489 109 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 RN7SKP200-201ENST00000410564 320 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 snoU13.9-201ENST00000458927 103 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 RPS23P4-201ENST00000487908 423 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.84□□□□□ -2.27
SCN1AP35498 SNORA70.12-201ENST00000516084 153 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 SNORD116-28-201ENST00000516123 91 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 RNU7-99P-201ENST00000516271 62 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 RN7SKP88-201ENST00000516847 250 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 RNU6-902P-201ENST00000517212 91 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.84□□□□□ -2.27
SCN1AP35498 7SK.8-201ENST00000612110 250 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 7SK.11-201ENST00000615477 250 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 U6.73-201ENST00000619194 103 ntBASIC0.84□□□□□ -2.27
SCN1AP35498 7SK.13-201ENST00000622040 250 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms