Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC092423.1-201ENST00000430165 186 ntBASIC1.02□□□□□ -2.25
SHMT2P34897 UBE2V1P7-201ENST00000446395 340 ntBASIC1.02□□□□□ -2.25
SHMT2P34897 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.02□□□□□ -2.25
SHMT2P34897 RN7SKP88-201ENST00000516847 250 ntBASIC1.02□□□□□ -2.25
SHMT2P34897 AC022868.1-201ENST00000517767 391 ntBASIC1.02□□□□□ -2.25
SHMT2P34897 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.02□□□□□ -2.25
SHMT2P34897 MIR3684-201ENST00000579779 74 ntBASIC1.02□□□□□ -2.25
SHMT2P34897 7SK.8-201ENST00000612110 250 ntBASIC1.02□□□□□ -2.25
SHMT2P34897 7SK.11-201ENST00000615477 250 ntBASIC1.02□□□□□ -2.25
SHMT2P34897 7SK.13-201ENST00000622040 250 ntBASIC1.02□□□□□ -2.25
SHMT2P34897 Y_RNA.166-201ENST00000363730 102 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 RNU4-14P-201ENST00000410858 122 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 RAB28P5-201ENST00000427490 651 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.01□□□□□ -2.25
SHMT2P34897 RPS29P28-201ENST00000446439 141 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AC091021.1-201ENST00000468051 388 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 MTND4P17-201ENST00000470444 350 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AL133373.1-201ENST00000497098 94 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.01□□□□□ -2.25
SHMT2P34897 SNORA40.9-201ENST00000515895 93 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 Y_RNA.691-201ENST00000516611 103 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 RNU6-1213P-201ENST00000517075 94 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 MTND4LP26-201ENST00000518144 282 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AC005899.2-201ENST00000584353 90 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AC091178.2-201ENST00000584401 117 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AL162424.1-201ENST00000602325 221 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AC005828.6-201ENST00000606610 232 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 MIR1244-1-201ENST00000612829 85 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 PISRT1.1-201ENST00000616930 107 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AC092794.2-201ENST00000620933 563 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 SNORD3E-202ENST00000627253 216 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 MIR1244-3-201ENST00000635744 85 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 MIR1244-2-201ENST00000636449 85 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 AL669831.3-213ENST00000636676 183 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 MIR1244-4-202ENST00000636813 85 ntBASIC1.01□□□□□ -2.25
SHMT2P34897 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
SHMT2P34897 CASC19-280ENST00000642102 1351 ntBASIC1□□□□□ -2.25
SHMT2P34897 RNU6-845P-201ENST00000362578 103 ntBASIC1□□□□□ -2.25
SHMT2P34897 RNU6-454P-201ENST00000364292 107 ntBASIC1□□□□□ -2.25
SHMT2P34897 RNU6-407P-201ENST00000365280 104 ntBASIC1□□□□□ -2.25
SHMT2P34897 MTCYBP4-201ENST00000401524 249 ntBASIC1□□□□□ -2.25
SHMT2P34897 PDCL2P1-201ENST00000419302 352 ntBASIC1□□□□□ -2.25
SHMT2P34897 PCNPP5-201ENST00000452246 481 ntBASIC1□□□□□ -2.25
SHMT2P34897 RNU6-625P-201ENST00000459412 107 ntBASIC1□□□□□ -2.25
SHMT2P34897 OR2A41P-201ENST00000473586 105 ntBASIC1□□□□□ -2.25
SHMT2P34897 RPL17P19-201ENST00000489069 552 ntBASIC1□□□□□ -2.25
SHMT2P34897 RNA5SP20-201ENST00000515976 84 ntBASIC1□□□□□ -2.25
SHMT2P34897 SNORD114-21-201ENST00000606412 72 ntBASIC1□□□□□ -2.25
SHMT2P34897 MIR8065-201ENST00000620577 100 ntBASIC1□□□□□ -2.25
SHMT2P34897 U6.115-201ENST00000636045 103 ntBASIC1□□□□□ -2.25
SHMT2P34897 AC099654.5-201ENST00000636479 350 ntBASIC1□□□□□ -2.25
SHMT2P34897 RNU6-1301P-201ENST00000362724 104 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 Y_RNA.124-201ENST00000363339 93 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 Y_RNA.160-201ENST00000363677 92 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.99□□□□□ -2.25
SHMT2P34897 RNU6-424P-201ENST00000384367 105 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.99□□□□□ -2.25
SHMT2P34897 AL137792.2-201ENST00000443484 235 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.99□□□□□ -2.25
SHMT2P34897 OR9P1P-201ENST00000496431 281 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.99□□□□□ -2.25
SHMT2P34897 RNU6-307P-201ENST00000516743 106 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 RNA5SP102-201ENST00000516865 106 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 MIR4778-201ENST00000577635 80 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 AC103810.9-201ENST00000606688 112 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 SNORA28-201ENST00000606769 126 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 AC106754.2-201ENST00000623006 233 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 AC098679.4-201ENST00000624241 654 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 MIR3674-201ENST00000636576 68 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 AC068647.2-201ENST00000637380 353 ntBASIC0.99□□□□□ -2.25
SHMT2P34897 SNORA1B-201ENST00000362535 133 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 Y_RNA.248-201ENST00000364501 109 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 RNU4-76P-201ENST00000364509 141 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 RNU6-99P-201ENST00000364721 107 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 RNU6-117P-201ENST00000365415 107 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 Y_RNA.498-201ENST00000384460 102 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 Y_RNA.505-201ENST00000384489 102 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 MIR873-201ENST00000401120 77 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.98□□□□□ -2.25
SHMT2P34897 CALM2P4-201ENST00000430810 426 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.98□□□□□ -2.25
SHMT2P34897 Y_RNA.676-201ENST00000516393 96 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 RNA5SP168-201ENST00000516642 112 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 RNU6-922P-201ENST00000516753 99 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 RNU6-341P-201ENST00000516973 96 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 MIR8070-201ENST00000616510 88 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 AC012676.2-201ENST00000619258 186 ntBASIC0.98□□□□□ -2.25
SHMT2P34897 RNU4-38P-201ENST00000364472 129 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 Y_RNA.361-201ENST00000365515 120 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 SNORA22-201ENST00000383907 134 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 RNU6-1080P-201ENST00000383982 107 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 SNORA22C-201ENST00000384614 134 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 RNU6-376P-201ENST00000384731 106 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 SNORD41-201ENST00000386967 70 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 RNU11-5P-201ENST00000391216 129 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 U8.16-201ENST00000391279 133 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 RNU5A-5P-201ENST00000411054 116 ntBASIC0.97□□□□□ -2.25
SHMT2P34897 MRPL35P3-201ENST00000421557 364 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms