Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
HOXD3P31249 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
HOXD3P31249 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.01□□□□□ -2.09
HOXD3P31249 AL159152.1-201ENST00000635019 2587 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
HOXD3P31249 RNU6-653P-201ENST00000363074 106 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 SNORD115-3-201ENST00000363100 82 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 U8.2-201ENST00000363156 134 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 SNORD114-30-201ENST00000364448 72 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 Y_RNA.287-201ENST00000364853 94 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 U8.7-201ENST00000364940 136 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 Y_RNA.572-201ENST00000384757 98 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 Y_RNA.793-201ENST00000411222 111 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 AL138752.1-201ENST00000452964 351 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 RNU7-141P-201ENST00000459304 62 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 RPS26P55-201ENST00000471178 356 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 AC117454.1-201ENST00000491120 168 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 SNORA70.12-201ENST00000516084 153 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 RNU6-1041P-201ENST00000516254 102 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 RNA5SP76-201ENST00000516277 87 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 RNA5SP24-201ENST00000516478 95 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 RNU6-856P-201ENST00000516959 98 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 RNU6-182P-201ENST00000516970 105 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 CYCSP26-201ENST00000534107 320 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.01□□□□□ -2.09
HOXD3P31249 MIR5692C2-201ENST00000577959 77 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 MIR4308-201ENST00000580634 81 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 AL049779.4-201ENST00000604500 156 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 AC010297.1-201ENST00000623948 149 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 AC064859.1-201ENST00000624741 174 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 ZNF271P-202ENST00000465539 1970 ntBASIC2.01□□□□□ -2.09
HOXD3P31249 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.01□□□□□ -2.09
HOXD3P31249 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
HOXD3P31249 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
HOXD3P31249 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
HOXD3P31249 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
HOXD3P31249 Y_RNA.456-201ENST00000384232 111 ntBASIC2□□□□□ -2.09
HOXD3P31249 RNU6-417P-201ENST00000384712 107 ntBASIC2□□□□□ -2.09
HOXD3P31249 MIR548I3-201ENST00000408378 149 ntBASIC2□□□□□ -2.09
HOXD3P31249 MIR548I1-201ENST00000408810 149 ntBASIC2□□□□□ -2.09
HOXD3P31249 RNA5SP511-201ENST00000410487 115 ntBASIC2□□□□□ -2.09
HOXD3P31249 RN7SKP51-201ENST00000410781 304 ntBASIC2□□□□□ -2.09
HOXD3P31249 SRIP3-201ENST00000413200 219 ntBASIC2□□□□□ -2.09
HOXD3P31249 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2□□□□□ -2.09
HOXD3P31249 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2□□□□□ -2.09
HOXD3P31249 AC008134.1-201ENST00000420943 193 ntBASIC2□□□□□ -2.09
HOXD3P31249 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2□□□□□ -2.09
HOXD3P31249 HSPE1P21-201ENST00000438283 308 ntBASIC2□□□□□ -2.09
HOXD3P31249 AC011753.1-201ENST00000451001 220 ntBASIC2□□□□□ -2.09
HOXD3P31249 COX6CP14-201ENST00000469580 174 ntBASIC2□□□□□ -2.09
HOXD3P31249 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2□□□□□ -2.09
HOXD3P31249 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2□□□□□ -2.09
HOXD3P31249 RNA5SP282-201ENST00000516355 108 ntBASIC2□□□□□ -2.09
HOXD3P31249 RNU2-34P-201ENST00000516534 121 ntBASIC2□□□□□ -2.09
HOXD3P31249 AC245884.12-201ENST00000615364 59 ntBASIC2□□□□□ -2.09
HOXD3P31249 AC013791.1-201ENST00000616619 62 ntBASIC2□□□□□ -2.09
HOXD3P31249 5S_rRNA.13-201ENST00000622298 123 ntBASIC2□□□□□ -2.09
HOXD3P31249 AC068647.2-201ENST00000637380 353 ntBASIC2□□□□□ -2.09
HOXD3P31249 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXD3P31249 ANKRD18EP-201ENST00000405487 2632 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXD3P31249 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXD3P31249 RNU1-91P-201ENST00000364746 163 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 Y_RNA.304-201ENST00000365011 112 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.99□□□□□ -2.09
HOXD3P31249 RNU1-148P-201ENST00000384472 162 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 RNA5SP467-201ENST00000391274 118 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 AL590004.2-201ENST00000404787 371 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 COX6CP10-201ENST00000416832 224 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.99□□□□□ -2.09
HOXD3P31249 CR769767.1-201ENST00000436337 346 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 HMGN2P34-201ENST00000437647 269 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 AC104332.1-201ENST00000440471 797 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.99□□□□□ -2.09
HOXD3P31249 AC011406.1-201ENST00000512440 370 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXD3P31249 AP002392.1-201ENST00000537692 208 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXD3P31249 MIR3684-201ENST00000579779 74 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 AC004832.4-201ENST00000608952 331 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 AL078604.3-201ENST00000615580 211 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 U4atac.1-201ENST00000618345 95 ntBASIC1.99□□□□□ -2.09
HOXD3P31249 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
HOXD3P31249 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
HOXD3P31249 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
HOXD3P31249 SNORD114-7-201ENST00000362520 77 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 SNORA33-201ENST00000363664 130 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 RNU6-271P-201ENST00000363858 105 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 RNU6-1164P-201ENST00000364428 107 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 Y_RNA.262-201ENST00000364641 102 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 Y_RNA.293-201ENST00000364908 93 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 RNU6-117P-201ENST00000365415 107 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 RNU6-209P-201ENST00000384118 107 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 MIR518C-201ENST00000384822 101 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
HOXD3P31249 RNA5SP210-201ENST00000391034 120 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 RNU6-918P-201ENST00000391219 106 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 MIR1253-201ENST00000408273 105 ntBASIC1.98□□□□□ -2.09
HOXD3P31249 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms