Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MIR449C-201ENST00000516047 92 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 RNY3P16-201ENST00000516338 101 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 AC022559.1-201ENST00000520905 205 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXD9P28356 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXD9P28356 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXD9P28356 AC009487.4-201ENST00000624969 3585 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HOXD9P28356 RNU6-746P-201ENST00000384112 109 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 RNU6-975P-201ENST00000384296 105 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 MIR221-201ENST00000385135 110 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 SNORA40.19-201ENST00000390846 128 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 RNU6-763P-201ENST00000390865 106 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 RNA5SP181-201ENST00000410246 98 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 HMGN2P35-201ENST00000412164 270 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HOXD9P28356 ATP5EP1-201ENST00000510257 156 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
HOXD9P28356 MIR4648-201ENST00000580107 72 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
HOXD9P28356 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXD9P28356 U4atac.1-201ENST00000618345 95 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.3□□□□□ -2.04
HOXD9P28356 AL159152.1-201ENST00000635019 2587 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
HOXD9P28356 RNU6-923P-201ENST00000364753 107 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 RNU1-52P-201ENST00000384190 164 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 Y_RNA.456-201ENST00000384232 111 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 AL121890.1-201ENST00000435457 205 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
HOXD9P28356 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXD9P28356 AC074290.1-201ENST00000448883 135 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 U8.19-201ENST00000459095 133 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 RNU7-57P-201ENST00000459540 60 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 AC114982.1-201ENST00000469402 321 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXD9P28356 Y_RNA.662-201ENST00000516028 97 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 SNORA70.12-201ENST00000516084 153 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 RNU1-104P-201ENST00000517280 175 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 SUMO2P18-201ENST00000518873 252 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXD9P28356 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXD9P28356 MIR4753-201ENST00000585119 83 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 AL137847.3-201ENST00000611521 109 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 MIR6873-201ENST00000622788 63 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 snoZ196.1-201ENST00000625269 89 ntBASIC2.29□□□□□ -2.04
HOXD9P28356 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
HOXD9P28356 Y_RNA.310-201ENST00000365063 113 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 SNORA72.4-201ENST00000384174 132 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 MIR561-201ENST00000385216 97 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
HOXD9P28356 SNORA26.5-201ENST00000391215 123 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 AC016925.1-201ENST00000458303 298 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 RNU6-221P-201ENST00000459541 99 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 AC074198.2-201ENST00000508153 258 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 HMGB3P3-201ENST00000510526 400 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 RNU6-255P-201ENST00000516957 105 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 MRPS18CP4-201ENST00000535821 231 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 AC013791.1-201ENST00000616619 62 ntBASIC2.28□□□□□ -2.04
HOXD9P28356 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXD9P28356 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.27□□□□□ -2.05
HOXD9P28356 RNA5SP393-201ENST00000363423 117 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 Y_RNA.287-201ENST00000364853 94 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 RNU1-138P-201ENST00000384093 164 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 RNU6-493P-201ENST00000391321 108 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 AL355497.1-201ENST00000406262 551 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 AL357139.1-201ENST00000407792 426 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 AC009238.1-201ENST00000442165 424 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 AC009237.6-201ENST00000446969 424 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXD9P28356 RNU6-948P-201ENST00000516374 107 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 AC022616.8-201ENST00000533569 253 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 AC009831.4-201ENST00000620744 325 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 MIR1248-201ENST00000629190 106 ntBASIC2.27□□□□□ -2.05
HOXD9P28356 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD9P28356 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
HOXD9P28356 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
HOXD9P28356 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXD9P28356 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXD9P28356 Y_RNA.341-201ENST00000365341 102 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 RNU6-546P-201ENST00000383991 107 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 AL355796.1-201ENST00000406706 323 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 RNU6-394P-201ENST00000410735 107 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 RN7SKP51-201ENST00000410781 304 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXD9P28356 RPL23AP7-203ENST00000449021 469 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 HSPE1P13-201ENST00000451143 297 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXD9P28356 YWHAEP4-201ENST00000505390 198 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 AC010598.1-201ENST00000510378 103 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 SNORA48.11-201ENST00000517015 89 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 IGKV3-31-201ENST00000523109 329 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 AC100767.1-201ENST00000528178 123 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 CYCSP26-201ENST00000534107 320 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXD9P28356 AC025754.2-201ENST00000606491 432 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 SNORD14A-201ENST00000606526 91 ntBASIC2.26□□□□□ -2.05
HOXD9P28356 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXD9P28356 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms