Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SNORA1.1-201ENST00000364671 133 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 AC117470.1-201ENST00000381974 330 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 MIR106A-201ENST00000384870 81 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 AP000870.1-201ENST00000472927 406 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 SNORA40.12-201ENST00000516329 111 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 MIR4436A-201ENST00000585278 85 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 AC087683.1-201ENST00000591187 441 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 AC010999.1-201ENST00000611856 324 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 MIR4251-201ENST00000635819 61 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 SNORD115-41-201ENST00000363608 82 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 RNU5A-6P-201ENST00000384136 116 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 AL355143.1-201ENST00000407101 841 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 MIR1298-201ENST00000408783 112 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 RNA5SP95-201ENST00000410319 137 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 AL663109.1-201ENST00000411498 844 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 RNU6-341P-201ENST00000516973 96 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 MIR3612-201ENST00000579753 87 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC-0.33□□□□□ -2.46
ABCA1O95477 FTX_2.1-201ENST00000618816 94 ntBASIC-0.33□□□□□ -2.46
ABCA1O95477 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 SNORA8.2-201ENST00000384372 139 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 MIR454-201ENST00000390180 115 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC-0.34□□□□□ -2.46
ABCA1O95477 RNU7-165P-201ENST00000458864 60 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 RNU7-138P-201ENST00000459479 64 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC-0.34□□□□□ -2.46
ABCA1O95477 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 RNU7-172P-201ENST00000517125 64 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 LRRC34P1-201ENST00000542742 915 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 MTCO3P23-201ENST00000561363 289 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 MTATP6P25-201ENST00000574491 261 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.34□□□□□ -2.46
ABCA1O95477 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC-0.34□□□□□ -2.46
ABCA1O95477 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 SNORD116.1-201ENST00000365628 92 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 MIR601-201ENST00000385256 79 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 AC018865.2-201ENST00000423631 129 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-0.34□□□□□ -2.46
ABCA1O95477 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-0.34□□□□□ -2.46
ABCA1O95477 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 SNORA18.7-201ENST00000516910 131 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 AC023442.1-201ENST00000531247 422 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 AC005176.2-201ENST00000596933 147 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 AP000753.3-201ENST00000604083 169 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 AC006157.1-201ENST00000611750 366 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 AL391099.1-201ENST00000624635 187 ntBASIC-0.34□□□□□ -2.46
ABCA1O95477 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.34□□□□□ -2.46
ABCA1O95477 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.34□□□□□ -2.46
ABCA1O95477 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 RNU6-433P-201ENST00000363216 104 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 RNU6-580P-201ENST00000365159 107 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 SNORD115-7-201ENST00000365306 82 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 SNORD14.1-201ENST00000365609 90 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 RNU6-815P-201ENST00000384080 113 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 RNU6-1200P-201ENST00000384162 107 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 ZNF885P-201ENST00000420174 1098 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC-0.35□□□□□ -2.47
ABCA1O95477 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.35□□□□□ -2.47
ABCA1O95477 AC091885.1-201ENST00000506658 268 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 AC026782.1-201ENST00000512952 449 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 RNA5SP54-201ENST00000516951 92 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 RNU2-12P-201ENST00000517216 168 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 MIR4762-201ENST00000585261 75 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 AC009878.1-201ENST00000621819 340 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 AL078596.1-201ENST00000624856 447 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 AL008636.1-201ENST00000625038 1018 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 AC008873.1-201ENST00000625051 138 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 Y_RNA.100-201ENST00000363141 102 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 Y_RNA.517-201ENST00000384551 106 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 MIR136-201ENST00000385207 82 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 MTCO3P19-201ENST00000415864 321 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 MCFD2P1-201ENST00000417812 300 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-0.35□□□□□ -2.47
ABCA1O95477 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.35□□□□□ -2.47
ABCA1O95477 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-0.35□□□□□ -2.47
ABCA1O95477 AC005042.3-201ENST00000453230 174 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 MTND4LP18-201ENST00000526864 291 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 AC023157.2-201ENST00000540596 141 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 NAMPTP3-201ENST00000569273 224 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 AC091304.9-201ENST00000612091 226 ntBASIC-0.35□□□□□ -2.47
ABCA1O95477 MTND5P17-201ENST00000418405 1603 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 RNU6-10P-201ENST00000384036 107 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 SNORD70.1-201ENST00000391007 85 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 AL512286.1-201ENST00000439244 400 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-0.36□□□□□ -2.47
ABCA1O95477 USP9YP25-201ENST00000457708 443 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 RNU7-102P-201ENST00000458948 62 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.36□□□□□ -2.47
ABCA1O95477 MTND2P32-201ENST00000521584 1038 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.36□□□□□ -2.47
ABCA1O95477 AL138960.2-201ENST00000625145 535 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 SNORA27.1-201ENST00000362604 124 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 Y_RNA.559-201ENST00000384686 107 ntBASIC-0.36□□□□□ -2.47
ABCA1O95477 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.36□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms