Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SNORD12B-201ENST00000410433 91 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 RAB28P5-201ENST00000427490 651 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.86□□□□□ -2.11
NPHP1O15259 AC097462.1-201ENST00000514125 324 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 RNU6-902P-201ENST00000517212 91 ntBASIC1.86□□□□□ -2.11
NPHP1O15259 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
NPHP1O15259 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
NPHP1O15259 AC018630.2-201ENST00000534866 2403 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 RNU4-13P-201ENST00000364019 141 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 Y_RNA.592-201ENST00000410274 109 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 RN7SKP200-201ENST00000410564 320 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 MTCO3P19-201ENST00000415864 321 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 RPS27P16-201ENST00000425758 201 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 SNRPGP13-201ENST00000442212 177 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 Y_RNA.653-201ENST00000459091 95 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 RNU7-94P-201ENST00000459576 63 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.85□□□□□ -2.11
NPHP1O15259 RNU6-470P-201ENST00000515954 104 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 RNU6-277P-201ENST00000516272 106 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 AC019176.1-201ENST00000518519 225 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 AC073413.2-201ENST00000604332 360 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 MIR3674-201ENST00000636576 68 ntBASIC1.85□□□□□ -2.11
NPHP1O15259 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.84□□□□□ -2.11
NPHP1O15259 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
NPHP1O15259 RNU6-1123P-201ENST00000362347 106 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 SNORD33-201ENST00000362761 85 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 RNU1-22P-201ENST00000363334 158 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 RNU6-454P-201ENST00000364292 107 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 MIR513A1-201ENST00000385138 129 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 RNU6-440P-201ENST00000390882 105 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.84□□□□□ -2.11
NPHP1O15259 MTND4P28-201ENST00000426217 387 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 RPL30P15-201ENST00000457129 321 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 AL117351.2-201ENST00000513571 157 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 AC025253.1-201ENST00000613623 543 ntBASIC1.84□□□□□ -2.11
NPHP1O15259 SNORA27.1-201ENST00000362604 124 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 RNU6-1297P-201ENST00000384415 104 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 SNORA12.1-201ENST00000390873 148 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.83□□□□□ -2.12
NPHP1O15259 RNU1-123P-201ENST00000458950 160 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 AC091951.2-201ENST00000500762 203 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 AC105758.1-201ENST00000506038 399 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 RNA5SP102-201ENST00000516865 106 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 MIR4452-201ENST00000583004 71 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 U6.115-201ENST00000636045 103 ntBASIC1.83□□□□□ -2.12
NPHP1O15259 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
NPHP1O15259 Y_RNA.387-201ENST00000383918 102 ntBASIC1.82□□□□□ -2.12
NPHP1O15259 RNA5SP475-201ENST00000410568 110 ntBASIC1.82□□□□□ -2.12
NPHP1O15259 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.82□□□□□ -2.12
NPHP1O15259 AC018865.2-201ENST00000423631 129 ntBASIC1.82□□□□□ -2.12
NPHP1O15259 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.82□□□□□ -2.12
NPHP1O15259 RNA5SP20-201ENST00000515976 84 ntBASIC1.82□□□□□ -2.12
NPHP1O15259 RNU7-172P-201ENST00000517125 64 ntBASIC1.82□□□□□ -2.12
NPHP1O15259 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.82□□□□□ -2.12
NPHP1O15259 MIR3937-201ENST00000580135 106 ntBASIC1.82□□□□□ -2.12
NPHP1O15259 MIR548S-201ENST00000581352 82 ntBASIC1.82□□□□□ -2.12
NPHP1O15259 MIR6734-201ENST00000621166 68 ntBASIC1.82□□□□□ -2.12
NPHP1O15259 AP000648.3-201ENST00000623539 4507 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 RNU6-407P-201ENST00000365280 104 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 SNORD116-29-201ENST00000384516 83 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.81□□□□□ -2.12
NPHP1O15259 ELOCP24-201ENST00000456370 334 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 RNU6-875P-201ENST00000516488 106 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 RNU7-4P-201ENST00000516961 62 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 SNORA4-201ENST00000584302 138 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 AP001485.1-201ENST00000604799 199 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 AC005828.6-201ENST00000606610 232 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 AL132765.2-201ENST00000610812 351 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 AC040896.1-201ENST00000613819 479 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 AC133104.2-201ENST00000615272 193 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 AL121890.5-201ENST00000620848 304 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 MIR6079-201ENST00000635807 62 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 MTND4LP32-201ENST00000636111 270 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 MIR1302-1-201ENST00000637932 143 ntBASIC1.81□□□□□ -2.12
NPHP1O15259 RNU6-42P-201ENST00000384165 107 ntBASIC1.8□□□□□ -2.12
NPHP1O15259 RNY3P14-201ENST00000384309 102 ntBASIC1.8□□□□□ -2.12
NPHP1O15259 MRPS18CP6-201ENST00000423587 223 ntBASIC1.8□□□□□ -2.12
NPHP1O15259 AC144568.1-201ENST00000520139 137 ntBASIC1.8□□□□□ -2.12
NPHP1O15259 AL365434.2-201ENST00000607979 234 ntBASIC1.8□□□□□ -2.12
NPHP1O15259 AL078604.3-201ENST00000615580 211 ntBASIC1.8□□□□□ -2.12
NPHP1O15259 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.8□□□□□ -2.12
NPHP1O15259 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.79□□□□□ -2.12
NPHP1O15259 MIR559-201ENST00000385188 96 ntBASIC1.79□□□□□ -2.12
NPHP1O15259 RNY4P36-201ENST00000391116 96 ntBASIC1.79□□□□□ -2.12
NPHP1O15259 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.79□□□□□ -2.12
NPHP1O15259 MTND5P20-201ENST00000448677 143 ntBASIC1.79□□□□□ -2.12
NPHP1O15259 RNU6-408P-201ENST00000515910 100 ntBASIC1.79□□□□□ -2.12
NPHP1O15259 AP001094.1-201ENST00000579805 193 ntBASIC1.79□□□□□ -2.12
NPHP1O15259 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.79□□□□□ -2.12
NPHP1O15259 Y_RNA.259-201ENST00000364619 101 ntBASIC1.78□□□□□ -2.12
NPHP1O15259 RNA5SP259-201ENST00000365541 109 ntBASIC1.78□□□□□ -2.12
NPHP1O15259 RNU6-1310P-201ENST00000384153 107 ntBASIC1.78□□□□□ -2.12
NPHP1O15259 Y_RNA.466-201ENST00000384294 113 ntBASIC1.78□□□□□ -2.12
NPHP1O15259 RNY1P14-201ENST00000384426 108 ntBASIC1.78□□□□□ -2.12
NPHP1O15259 RNU11-5P-201ENST00000391216 129 ntBASIC1.78□□□□□ -2.12
NPHP1O15259 AL034345.1-201ENST00000407768 123 ntBASIC1.78□□□□□ -2.12
NPHP1O15259 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.78□□□□□ -2.12
NPHP1O15259 AL137792.2-201ENST00000443484 235 ntBASIC1.78□□□□□ -2.12
NPHP1O15259 PGBD4P5-201ENST00000445958 426 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 137.1 ms