Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC005562.2-201ENST00000618264 111 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 AC010975.3-201ENST00000618727 978 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 AC027279.3-201ENST00000625055 122 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 RNU6-137P-201ENST00000363680 108 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 RNU6-47P-201ENST00000383866 107 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 RNU6-549P-201ENST00000384433 107 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 Y_RNA.537-201ENST00000384626 109 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 MCFD2P1-201ENST00000417812 300 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 AL117339.3-201ENST00000418733 162 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 AL360271.2-201ENST00000447710 161 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 ZNF114P1-201ENST00000453500 292 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 SNORD123-201ENST00000459473 70 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 AC093023.1-201ENST00000547375 507 ntBASIC-1.45□□□□□ -2.64
CCDC88BA6NC98 MIR586-201ENST00000385035 97 ntBASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 AL390729.2-201ENST00000416137 156 ntBASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 AL353572.1-201ENST00000442490 417 ntBASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 EXOSC3P1-201ENST00000448649 500 ntBASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 AC040926.1-201ENST00000530195 238 ntBASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 AP002004.2-201ENST00000531656 154 ntBASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 AC120024.3-201ENST00000603167 156 ntBASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 AC093726.3-201ENST00000637588 150 ntBASIC-1.46□□□□□ -2.64
CCDC88BA6NC98 MIR377-201ENST00000362145 69 ntBASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 RNU6-190P-201ENST00000384154 102 ntBASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 AC008628.2-201ENST00000502605 298 ntBASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 MIR4438-201ENST00000585271 93 ntBASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 TUG1_4.1-201ENST00000619464 181 ntBASIC-1.47□□□□□ -2.64
CCDC88BA6NC98 U8.6-201ENST00000364939 135 ntBASIC-1.48□□□□□ -2.65
CCDC88BA6NC98 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-1.48□□□□□ -2.65
CCDC88BA6NC98 RNU7-185P-201ENST00000459215 60 ntBASIC-1.48□□□□□ -2.65
CCDC88BA6NC98 AC005178.1-201ENST00000508392 440 ntBASIC-1.48□□□□□ -2.65
CCDC88BA6NC98 RNA5SP470-201ENST00000516463 106 ntBASIC-1.48□□□□□ -2.65
CCDC88BA6NC98 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC-1.48□□□□□ -2.65
CCDC88BA6NC98 MIR544B-201ENST00000582372 78 ntBASIC-1.48□□□□□ -2.65
CCDC88BA6NC98 AL078596.1-201ENST00000624856 447 ntBASIC-1.48□□□□□ -2.65
CCDC88BA6NC98 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.49□□□□□ -2.65
CCDC88BA6NC98 SNORD28-201ENST00000384706 75 ntBASIC-1.49□□□□□ -2.65
CCDC88BA6NC98 MIR1285-2-201ENST00000408311 88 ntBASIC-1.49□□□□□ -2.65
CCDC88BA6NC98 AC114491.1-201ENST00000416095 246 ntBASIC-1.49□□□□□ -2.65
CCDC88BA6NC98 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC-1.49□□□□□ -2.65
CCDC88BA6NC98 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.49□□□□□ -2.65
CCDC88BA6NC98 FRG2DP-202ENST00000566967 323 ntBASIC-1.49□□□□□ -2.65
CCDC88BA6NC98 SNORA70.25-201ENST00000612741 95 ntBASIC-1.49□□□□□ -2.65
CCDC88BA6NC98 RNU6-428P-201ENST00000362942 107 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 RNU5A-6P-201ENST00000384136 116 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 MIR562-201ENST00000384894 95 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 RNU6-341P-201ENST00000516973 96 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 MIR548AR-201ENST00000582191 57 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 MIR4441-201ENST00000582623 100 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 RNU6-490P-201ENST00000362985 107 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 Y_RNA.439-201ENST00000384119 94 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 RNU6-125P-201ENST00000384505 107 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 Y_RNA.617-201ENST00000410920 90 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 MTCO3P8-201ENST00000453691 755 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 AL500527.2-201ENST00000454105 95 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 AC021451.1-201ENST00000523498 1129 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 MIR378D2-201ENST00000580636 98 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 AP000907.4-201ENST00000604143 237 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 AC244669.1-204ENST00000621564 178 ntBASIC-1.5□□□□□ -2.65
CCDC88BA6NC98 RNU6-1292P-201ENST00000383856 107 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 RNU6-1144P-201ENST00000384247 104 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 SNORA51.10-201ENST00000384418 136 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 Y_RNA.559-201ENST00000384686 107 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 MIR570-201ENST00000384917 97 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 AC010486.3-201ENST00000511602 785 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 MIR4306-201ENST00000583390 91 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 MIR4264-201ENST00000583520 66 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 AL139418.1-201ENST00000613613 177 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 AL157770.1-201ENST00000623049 439 ntBASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 UGP2-231ENST00000627474 264 ntTSL 5 BASIC-1.51□□□□□ -2.65
CCDC88BA6NC98 Y_RNA.148-201ENST00000363557 117 ntBASIC-1.52□□□□□ -2.65
CCDC88BA6NC98 RNU6-25P-201ENST00000383873 107 ntBASIC-1.52□□□□□ -2.65
CCDC88BA6NC98 RNU6-29P-201ENST00000384637 107 ntBASIC-1.52□□□□□ -2.65
CCDC88BA6NC98 MIR18B-201ENST00000454574 71 ntBASIC-1.52□□□□□ -2.65
CCDC88BA6NC98 RNU7-73P-201ENST00000458743 63 ntBASIC-1.52□□□□□ -2.65
CCDC88BA6NC98 RNU7-62P-201ENST00000458856 62 ntBASIC-1.52□□□□□ -2.65
CCDC88BA6NC98 AP001330.5-201ENST00000607176 411 ntBASIC-1.52□□□□□ -2.65
CCDC88BA6NC98 SNORD68-201ENST00000363214 84 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 RNU6-371P-201ENST00000364283 108 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 SNORD51.1-201ENST00000365405 77 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 SNORD65.1-201ENST00000390889 71 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 MIR1257-201ENST00000408490 117 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 SNORA31.14-201ENST00000516728 116 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 PCMTD1P2-201ENST00000565017 355 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 AC022306.2-201ENST00000617563 647 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 AC078880.5-201ENST00000617845 421 ntBASIC-1.53□□□□□ -2.65
CCDC88BA6NC98 RNU5A-8P-201ENST00000364102 114 ntBASIC-1.54□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms