Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ELOCP24-201ENST00000456370 334 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 RPL30P15-201ENST00000457129 321 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 SNORD65B-201ENST00000459126 73 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 snoU13.27-201ENST00000459278 104 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 AL163195.1-201ENST00000496941 348 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU1-142P-201ENST00000516682 145 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-902P-201ENST00000517212 91 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 AC022432.1-201ENST00000595739 310 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 ZNF209P-201ENST00000593450 2304 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 AC100821.1-201ENST00000523153 2479 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-1301P-201ENST00000362724 104 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 Y_RNA.224-201ENST00000364308 111 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-1264P-201ENST00000383891 107 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 Y_RNA.384-201ENST00000383909 102 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 SNORD116-29-201ENST00000384516 83 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR489-201ENST00000384923 84 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR625-201ENST00000385047 85 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-955P-201ENST00000410497 104 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 MTND5P20-201ENST00000448677 143 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 AC079140.2-201ENST00000506193 142 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 AL161670.1-201ENST00000554348 137 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 AL137100.2-201ENST00000555786 315 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR4421-201ENST00000578133 69 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR548S-201ENST00000581352 82 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 AL359075.3-201ENST00000613288 217 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 AC133104.2-201ENST00000615272 193 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 U6.73-201ENST00000619194 103 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 MTND4LP32-201ENST00000636111 270 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR1302-1-201ENST00000637932 143 ntBASIC1.53□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR410-201ENST00000362222 80 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU6-271P-201ENST00000363858 105 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 RNY3P14-201ENST00000384309 102 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 SNORA69.1-201ENST00000390904 137 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 RNA5SP323-201ENST00000391094 133 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.592-201ENST00000410274 109 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 RPS26P55-201ENST00000471178 356 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.718-201ENST00000517110 102 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 SNORA31.24-201ENST00000517232 57 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 AC018448.1-201ENST00000552843 316 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 MIR4709-201ENST00000577272 72 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 AL121890.5-201ENST00000620848 304 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.52□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.70-201ENST00000362886 110 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.259-201ENST00000364619 101 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.263-201ENST00000364659 114 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.498-201ENST00000384460 102 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU6-1065P-201ENST00000384513 106 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU6-1009P-201ENST00000390996 107 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 RNY4P36-201ENST00000391116 96 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 RN7SKP101-201ENST00000411376 320 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 MTND4P28-201ENST00000426217 387 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 AC093019.1-201ENST00000443135 252 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 RPS26P45-201ENST00000471748 340 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 AC010598.1-201ENST00000510378 103 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU7-128P-201ENST00000517247 62 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 AL355375.2-201ENST00000574825 175 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 MIR8063-201ENST00000621930 81 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 AC006435.5-201ENST00000624486 112 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 AC073544.1-201ENST00000600110 1595 ntBASIC1.51□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU6-490P-201ENST00000362985 107 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 SNORD1A-201ENST00000364968 72 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.466-201ENST00000384294 113 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 SNORD12B-201ENST00000410433 91 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU1-123P-201ENST00000458950 160 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 AL117351.2-201ENST00000513571 157 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU7-99P-201ENST00000516271 62 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.702-201ENST00000516843 96 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU7-4P-201ENST00000516961 62 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 AC144568.1-201ENST00000520139 137 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 MIR3684-201ENST00000579779 74 ntBASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
PCDHGA1Q9Y5H4 SNORA4.2-201ENST00000365313 147 ntBASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 Y_RNA.529-201ENST00000384586 119 ntBASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 MIR559-201ENST00000385188 96 ntBASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU11-5P-201ENST00000391216 129 ntBASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 RNU6-1186P-201ENST00000410429 97 ntBASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 MRPS18CP6-201ENST00000423587 223 ntBASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 RPS27P1-201ENST00000450552 247 ntBASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.49□□□□□ -2.17
PCDHGA1Q9Y5H4 RPS29P23-201ENST00000458635 123 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms