Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AL442163.3-201ENST00000554110 156 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 AP000942.3-201ENST00000603702 160 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 U2.1-201ENST00000618978 145 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 U6.73-201ENST00000619194 103 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 AC104985.2-201ENST00000620598 500 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.146-201ENST00000363549 102 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.315-201ENST00000365117 102 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 RNU6-997P-201ENST00000384725 107 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 RNU6-360P-201ENST00000390944 104 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 RNA5SP323-201ENST00000391094 133 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 AL355796.1-201ENST00000406706 323 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 FTH1P12-201ENST00000432137 551 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 RPS27P1-201ENST00000450552 247 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 snoU13.9-201ENST00000458927 103 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 RPS26P45-201ENST00000471748 340 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 AL137100.2-201ENST00000555786 315 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 AL359075.3-201ENST00000613288 217 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 AC091925.1-201ENST00000623204 462 ntBASIC1.64□□□□□ -2.15
CPSF3Q9UKF6 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNU6-414P-201ENST00000363705 104 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNU6-961P-201ENST00000363893 105 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNU6-926P-201ENST00000384075 107 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNU6-708P-201ENST00000384217 107 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 SNORA20B-201ENST00000384220 132 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNY3P4-201ENST00000384428 101 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.579-201ENST00000390939 94 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNA5SP109-201ENST00000391010 116 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 SNORA67.6-201ENST00000391093 99 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNU1-78P-201ENST00000391248 165 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNU4-62P-201ENST00000410125 130 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNU6-1186P-201ENST00000410429 97 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 AC005908.1-201ENST00000468701 347 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RPL26P26-201ENST00000480251 434 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RPL36AP21-201ENST00000490372 323 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 AC010598.1-201ENST00000510378 103 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.675-201ENST00000516389 149 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNU1-142P-201ENST00000516682 145 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNA5SP481-201ENST00000516814 122 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 AC023157.2-201ENST00000540596 141 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 MIR3674-201ENST00000636576 68 ntBASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
CPSF3Q9UKF6 RNA5SP363-201ENST00000365072 115 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.428-201ENST00000384078 102 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 MRPS10P1-201ENST00000448483 130 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 AC245517.4-201ENST00000448601 281 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 AC010469.2-201ENST00000496412 480 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 RNU6-408P-201ENST00000515910 100 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 SNORA31.24-201ENST00000517232 57 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 AC015720.1-201ENST00000565251 277 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 AC055872.1-201ENST00000570978 278 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 MIR4438-201ENST00000585271 93 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 AC022217.4-201ENST00000604389 163 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 AC006435.5-201ENST00000624486 112 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 MIR4272-201ENST00000635924 64 ntBASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
CPSF3Q9UKF6 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.5-201ENST00000362334 102 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 MIR1304-201ENST00000408243 91 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 MIR1267-201ENST00000408723 78 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 AL603825.1-201ENST00000438481 80 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 snoU13.27-201ENST00000459278 104 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 RPS27P22-201ENST00000478056 241 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 AC023790.1-201ENST00000482174 347 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 RNU7-99P-201ENST00000516271 62 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 RNU6-911P-201ENST00000516523 104 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 SNORD116.3-201ENST00000517176 78 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 SNORA77B-201ENST00000578179 125 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 AL008636.1-201ENST00000625038 1018 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 AC095038.3-201ENST00000634439 195 ntBASIC1.61□□□□□ -2.15
CPSF3Q9UKF6 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.140-201ENST00000363474 103 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.509-201ENST00000384506 99 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 MIR628-201ENST00000385229 95 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 RPL21P1-201ENST00000399532 476 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 RNA5SP475-201ENST00000410568 110 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 JTBP1-201ENST00000441314 247 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 RNU6-970P-201ENST00000516312 107 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 RNU6-1012P-201ENST00000516606 109 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 AC006600.1-201ENST00000572529 153 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 AL133255.1-201ENST00000606374 441 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 AC005828.6-201ENST00000606610 232 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms