Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC006254.2-201ENST00000603259 279 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 TNPO1P3-201ENST00000436471 2662 ntBASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LIMD1Q9UGP4 ZNF271P-202ENST00000465539 1970 ntBASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 MIR199A2-201ENST00000385289 110 ntBASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 SNORA12.1-201ENST00000390873 148 ntBASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 RNA5SP120-201ENST00000410900 112 ntBASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 RNU6-1270P-201ENST00000517128 108 ntBASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 AC020914.4-201ENST00000597690 277 ntBASIC3.89□□□□□ -1.79
LIMD1Q9UGP4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 Y_RNA.267-201ENST00000364679 109 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 RNU1-89P-201ENST00000384592 164 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 MIR802-201ENST00000390235 94 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 MIR1263-201ENST00000408324 86 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 EDDM3CP-201ENST00000415977 425 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 RN7SL636P-201ENST00000497504 294 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 VWA8P1-201ENST00000510889 176 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 RNU6-693P-201ENST00000516134 107 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 MIR3616-201ENST00000584070 92 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 AL591424.2-201ENST00000617023 128 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 MIR338-201ENST00000636369 67 ntBASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.88□□□□□ -1.79
LIMD1Q9UGP4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 MIR126-201ENST00000362291 85 ntBASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 Y_RNA.528-201ENST00000384575 108 ntBASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 SNORD72-201ENST00000390994 80 ntBASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 AC006539.3-201ENST00000454258 129 ntBASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 AC024995.1-201ENST00000523014 93 ntBASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 AP002004.2-201ENST00000531656 154 ntBASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
LIMD1Q9UGP4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 SNORD9-201ENST00000362566 104 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 Y_RNA.99-201ENST00000363138 105 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 Y_RNA.116-201ENST00000363292 103 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 RNA5SP322-201ENST00000363617 119 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 Y_RNA.281-201ENST00000364774 94 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 RNA5SP323-201ENST00000391094 133 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 RNA5SP467-201ENST00000391274 118 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 FTH1P12-201ENST00000432137 551 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 RNU1-131P-201ENST00000458943 161 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 RPS29P24-201ENST00000486345 171 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 Y_RNA.666-201ENST00000516187 112 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 RNU6-1041P-201ENST00000516254 102 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 RNU6-1149P-201ENST00000516810 97 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 RNU6-667P-201ENST00000517186 102 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 MIR486-1-201ENST00000612171 68 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 MAPK10-373ENST00000641983 6772 ntBASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIMD1Q9UGP4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 SNORA38.1-201ENST00000364172 131 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 Y_RNA.495-201ENST00000384435 112 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 MIR570-201ENST00000384917 97 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 CYCSP4-201ENST00000429682 331 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 COX6CP6-201ENST00000490840 228 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 SCGB1D5P-201ENST00000515134 247 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 AC068657.1-201ENST00000520807 306 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 AC022217.4-201ENST00000604389 163 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 SNORA62.6-201ENST00000606322 83 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 U6.98-201ENST00000637157 84 ntBASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LIMD1Q9UGP4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 MIR592-201ENST00000384959 97 ntBASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 AC003685.2-201ENST00000422795 395 ntBASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 AC002075.2-201ENST00000425207 252 ntBASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 AL049830.1-201ENST00000468034 425 ntBASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 IGKV1-22-201ENST00000524313 326 ntBASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 AL137067.1-201ENST00000615933 120 ntBASIC3.84□□□□□ -1.79
LIMD1Q9UGP4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 RNU1-33P-201ENST00000364249 162 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 RNA5SP125-201ENST00000364843 120 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms