Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-325P-201ENST00000411132 105 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 CALM2P4-201ENST00000430810 426 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 snoU13.6-201ENST00000458785 104 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 Y_RNA.654-201ENST00000497848 106 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 AL137161.1-201ENST00000532231 390 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 AC009248.2-201ENST00000619826 254 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
SCN3AQ9NY46 RNA5SP219-201ENST00000390940 113 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 MTND1P4-201ENST00000435196 415 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 RNU7-167P-201ENST00000459160 62 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 SNORA25.14-201ENST00000516481 132 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 RNA5SP395-201ENST00000516567 118 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 RNU7-28P-201ENST00000516759 62 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 MRPS36P3-201ENST00000519284 130 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 AL096861.1-201ENST00000610899 123 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 AC240442.1-201ENST00000616055 283 ntBASIC0.03□□□□□ -2.4
SCN3AQ9NY46 RNU6-369P-201ENST00000362515 102 ntBASIC0.03□□□□□ -2.41
SCN3AQ9NY46 Y_RNA.179-201ENST00000363844 90 ntBASIC0.03□□□□□ -2.41
SCN3AQ9NY46 RNU6-280P-201ENST00000364145 104 ntBASIC0.03□□□□□ -2.41
SCN3AQ9NY46 SNORA2.2-201ENST00000365473 135 ntBASIC0.03□□□□□ -2.41
SCN3AQ9NY46 Y_RNA.390-201ENST00000383932 102 ntBASIC0.03□□□□□ -2.41
SCN3AQ9NY46 MIR1302-7-201ENST00000408841 72 ntBASIC0.03□□□□□ -2.41
SCN3AQ9NY46 AC018865.2-201ENST00000423631 129 ntBASIC0.03□□□□□ -2.41
SCN3AQ9NY46 AC067940.1-201ENST00000458411 300 ntBASIC0.03□□□□□ -2.41
SCN3AQ9NY46 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.03□□□□□ -2.41
SCN3AQ9NY46 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.02□□□□□ -2.41
SCN3AQ9NY46 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
SCN3AQ9NY46 RNU6-74P-201ENST00000384235 107 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 SNORA40.3-201ENST00000390964 122 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 RNU6-994P-201ENST00000410507 111 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 TPTE2P5-203ENST00000458118 728 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.02□□□□□ -2.41
SCN3AQ9NY46 AGGF1P4-201ENST00000568249 801 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 AC023827.1-201ENST00000569247 97 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 AC104408.1-201ENST00000605241 170 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 AL158209.2-201ENST00000619266 216 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.02□□□□□ -2.41
SCN3AQ9NY46 SNORD114-7-201ENST00000362520 77 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNA5SP214-201ENST00000363378 118 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 SNORD114-9-201ENST00000364370 72 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 Y_RNA.267-201ENST00000364679 109 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU6-407P-201ENST00000365280 104 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 Y_RNA.560-201ENST00000384689 102 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MIR520F-201ENST00000384824 87 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MTCYBP4-201ENST00000401524 249 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 AL606923.1-201ENST00000406616 190 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU6-177P-201ENST00000411257 104 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU6-1304P-201ENST00000411374 106 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.01□□□□□ -2.41
SCN3AQ9NY46 SSR1P2-201ENST00000415208 787 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MTND4P32-201ENST00000437189 1237 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.01□□□□□ -2.41
SCN3AQ9NY46 USP9YP12-201ENST00000450481 570 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 AC074133.1-201ENST00000515696 183 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU7-41P-201ENST00000515917 61 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RN7SKP164-201ENST00000516138 266 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU6-977P-201ENST00000516411 103 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU4-77P-201ENST00000516692 156 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MIR3913-1-201ENST00000577744 102 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MIR4804-201ENST00000581683 73 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 AC007684.1-201ENST00000609671 477 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 TUSC7.1-201ENST00000610969 165 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 AC079248.2-201ENST00000623779 326 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU6-396P-201ENST00000365369 105 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU6-1103P-201ENST00000384150 107 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 Y_RNA.471-201ENST00000384312 102 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MIR452-201ENST00000385020 85 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.01□□□□□ -2.41
SCN3AQ9NY46 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.01□□□□□ -2.41
SCN3AQ9NY46 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU7-125P-201ENST00000458760 62 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 RNU7-172P-201ENST00000517125 64 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MIR4778-201ENST00000577635 80 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MIR5583-1-201ENST00000580941 59 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 MIR4762-201ENST00000585261 75 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.01□□□□□ -2.41
SCN3AQ9NY46 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0□□□□□ -2.41
SCN3AQ9NY46 RNU6-1084P-201ENST00000362498 107 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 SNORD114-16-201ENST00000363044 70 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 Y_RNA.415-201ENST00000384012 112 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 RNU5A-2P-201ENST00000384337 116 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0□□□□□ -2.41
SCN3AQ9NY46 AC133104.1-201ENST00000429100 218 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 DAP3P1-201ENST00000441522 278 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 SNORA25.12-201ENST00000516202 82 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 AK6P2-201ENST00000549020 471 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 AC026371.1-201ENST00000551867 419 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 MIR4802-201ENST00000581881 80 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 AC104260.1-201ENST00000616660 539 ntBASIC0□□□□□ -2.41
SCN3AQ9NY46 SNORA27.1-201ENST00000362604 124 ntBASIC-0.01□□□□□ -2.41
SCN3AQ9NY46 SNORD44.1-201ENST00000363202 61 ntBASIC-0.01□□□□□ -2.41
SCN3AQ9NY46 SNORA42.1-201ENST00000363515 137 ntBASIC-0.01□□□□□ -2.41
SCN3AQ9NY46 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 222 ms