Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
CDX2Q99626 MIR6513-201ENST00000621188 64 ntBASIC1.13□□□□□ -2.23
CDX2Q99626 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.13□□□□□ -2.23
CDX2Q99626 SNORD42.2-201ENST00000365570 69 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 RNU6-1286P-201ENST00000383871 107 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 Y_RNA.387-201ENST00000383918 102 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 SNORD26-201ENST00000384147 75 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 RNU6-708P-201ENST00000384217 107 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 MIR521-1-201ENST00000384902 87 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 MIR559-201ENST00000385188 96 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
CDX2Q99626 MTCYBP4-201ENST00000401524 249 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 AC004866.1-201ENST00000411748 78 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.12□□□□□ -2.23
CDX2Q99626 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.12□□□□□ -2.23
CDX2Q99626 MTCO3P29-201ENST00000432119 779 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.12□□□□□ -2.23
CDX2Q99626 MTCYBP6-201ENST00000441810 138 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CDX2Q99626 AC107399.1-201ENST00000451226 265 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 snoU13.6-201ENST00000458785 104 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 SNORD5.1-201ENST00000458800 75 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 U8.22-201ENST00000459141 133 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 AC105758.1-201ENST00000506038 399 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.12□□□□□ -2.23
CDX2Q99626 AC093303.1-201ENST00000514549 295 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 RNU5F-4P-201ENST00000516581 114 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.12□□□□□ -2.23
CDX2Q99626 SUMO2P18-201ENST00000518873 252 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.12□□□□□ -2.23
CDX2Q99626 MIR4714-201ENST00000580728 77 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 MIR4422-201ENST00000581938 83 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 AC044792.1-201ENST00000593294 196 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 MIR8087-201ENST00000612745 78 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 MIR6857-201ENST00000613267 93 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.12□□□□□ -2.23
CDX2Q99626 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
CDX2Q99626 AC009541.1-201ENST00000438279 2662 ntBASIC1.12□□□□□ -2.23
CDX2Q99626 Y_RNA.2-201ENST00000362330 96 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 Y_RNA.123-201ENST00000363338 102 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 RNU6-438P-201ENST00000365561 103 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 RNU6-214P-201ENST00000384130 107 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 Y_RNA.482-201ENST00000384377 111 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 PMCHL1-202ENST00000423102 261 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.11□□□□□ -2.23
CDX2Q99626 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.11□□□□□ -2.23
CDX2Q99626 PCMTD1P1-201ENST00000455560 355 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 Y_RNA.635-201ENST00000459041 101 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 AF186996.7-201ENST00000492781 209 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.11□□□□□ -2.23
CDX2Q99626 RNU6-1016P-201ENST00000516689 94 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 RNU6-699P-201ENST00000517081 110 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.11□□□□□ -2.23
CDX2Q99626 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.11□□□□□ -2.23
CDX2Q99626 MIR1244-1-201ENST00000612829 85 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 AC007485.1-201ENST00000616755 206 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 MIR1244-3-201ENST00000635744 85 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 MIR1244-2-201ENST00000636449 85 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 MIR1244-4-202ENST00000636813 85 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 AC018630.2-201ENST00000534866 2403 ntBASIC1.11□□□□□ -2.23
CDX2Q99626 AL159152.1-201ENST00000635019 2587 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RNU6-716P-201ENST00000365621 103 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RNU6-128P-201ENST00000383976 107 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RNU6-1013P-201ENST00000384180 107 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RNU6-1297P-201ENST00000384415 104 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RNU6-790P-201ENST00000384479 105 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 MT-TD-201ENST00000387419 68 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 MIR936-201ENST00000401264 98 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RNA5SP494-201ENST00000410653 129 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RNA5SP127-201ENST00000411051 133 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 AC060773.1-201ENST00000421698 310 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.1□□□□□ -2.23
CDX2Q99626 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.1□□□□□ -2.23
CDX2Q99626 ELOCP24-201ENST00000456370 334 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RNU7-152P-201ENST00000458982 64 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 AC007215.1-201ENST00000464893 276 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RPL30P10-201ENST00000488148 337 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 RPS23P5-201ENST00000495419 428 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.1□□□□□ -2.23
CDX2Q99626 HMGN1P13-201ENST00000505795 138 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 AC022432.1-201ENST00000595739 310 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 AC069114.2-201ENST00000604699 304 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.1□□□□□ -2.23
CDX2Q99626 AL080274.1-201ENST00000605565 220 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 AC126177.8-201ENST00000618339 1015 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 uc_338.22-201ENST00000622722 187 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 AL160413.1-201ENST00000622780 310 ntBASIC1.1□□□□□ -2.23
CDX2Q99626 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
CDX2Q99626 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.09□□□□□ -2.23
CDX2Q99626 RNU6-1115P-201ENST00000362490 106 ntBASIC1.09□□□□□ -2.23
CDX2Q99626 RNU6-862P-201ENST00000362804 105 ntBASIC1.09□□□□□ -2.23
CDX2Q99626 RNU6-99P-201ENST00000364721 107 ntBASIC1.09□□□□□ -2.23
CDX2Q99626 Y_RNA.384-201ENST00000383909 102 ntBASIC1.09□□□□□ -2.23
CDX2Q99626 RNU6-17P-201ENST00000384245 107 ntBASIC1.09□□□□□ -2.23
CDX2Q99626 Y_RNA.463-201ENST00000384271 102 ntBASIC1.09□□□□□ -2.23
CDX2Q99626 RNU6-18P-201ENST00000384527 107 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms