Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL590240.4-201ENST00000616908 390 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 U1.36-201ENST00000620684 176 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 Y_RNA.101-201ENST00000363154 102 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 Y_RNA.143-201ENST00000363520 106 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 RNU5F-3P-201ENST00000363767 117 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 Y_RNA.214-201ENST00000364201 112 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 Y_RNA.422-201ENST00000384054 114 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 RNU6-20P-201ENST00000384106 107 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 RNU6-937P-201ENST00000384325 106 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 Y_RNA.551-201ENST00000384661 102 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 MIR300-201ENST00000401138 83 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 MRPL35P1-201ENST00000404272 572 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 RNU6-57P-201ENST00000411348 103 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 AC016909.1-201ENST00000415916 166 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 RNU7-57P-201ENST00000459540 60 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 MRPS35P2-201ENST00000508242 191 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 AP005660.1-201ENST00000522972 293 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.76□□□□□ -2.13
USP28Q96RU2 AC010205.1-201ENST00000616668 449 ntBASIC1.76□□□□□ -2.13
USP28Q96RU2 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.75□□□□□ -2.13
USP28Q96RU2 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
USP28Q96RU2 RNU6-626P-201ENST00000363354 107 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 Y_RNA.145-201ENST00000363527 102 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 Y_RNA.498-201ENST00000384460 102 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 MIR597-201ENST00000384968 97 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 RPL21P1-201ENST00000399532 476 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 MIR1289-2-201ENST00000408360 111 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 MIR548F4-201ENST00000408515 105 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 MIR1283-2-201ENST00000408621 87 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.75□□□□□ -2.13
USP28Q96RU2 AC005002.2-201ENST00000438228 269 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 HSPE1P21-201ENST00000438283 308 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 HMGN1P10-201ENST00000474557 553 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 SNORA25.15-201ENST00000516487 89 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 Y_RNA.721-201ENST00000517207 102 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.75□□□□□ -2.13
USP28Q96RU2 MIR3683-201ENST00000580847 82 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 AC136443.5-201ENST00000603741 370 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.75□□□□□ -2.13
USP28Q96RU2 LINC02555-201ENST00000563933 1951 ntBASIC1.75□□□□□ -2.13
USP28Q96RU2 Y_RNA.64-201ENST00000362845 102 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 Y_RNA.99-201ENST00000363138 105 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 U3.8-201ENST00000363675 217 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 Y_RNA.439-201ENST00000384119 94 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 Y_RNA.459-201ENST00000384251 102 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
USP28Q96RU2 SNORA26.9-201ENST00000391322 122 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 RNU4-30P-201ENST00000410245 143 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
USP28Q96RU2 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.74□□□□□ -2.13
USP28Q96RU2 AC098869.1-201ENST00000481627 292 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 AC008834.1-201ENST00000511612 175 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 AC074133.1-201ENST00000515696 183 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 AC087441.2-201ENST00000529141 262 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.74□□□□□ -2.13
USP28Q96RU2 AC022254.1-201ENST00000567857 235 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 MIR3945-201ENST00000581853 98 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 BX248123.2-201ENST00000606318 124 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 AC004467.1-201ENST00000615678 330 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 AC006001.4-201ENST00000622243 395 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 AC022513.1-201ENST00000624512 117 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 MIR3674-201ENST00000636576 68 ntBASIC1.74□□□□□ -2.13
USP28Q96RU2 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.74□□□□□ -2.13
USP28Q96RU2 Y_RNA.222-201ENST00000364264 102 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 Y_RNA.286-201ENST00000364813 102 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 RNU6-1264P-201ENST00000383891 107 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 RNU6-102P-201ENST00000384485 104 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 Y_RNA.526-201ENST00000384572 110 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 MIR215-201ENST00000384858 110 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 RNU11-3P-201ENST00000391111 133 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 MIR1304-201ENST00000408243 91 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 SNORA11.2-201ENST00000408318 127 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 MIR1185-2-201ENST00000408687 86 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 RPL21P38-201ENST00000418090 167 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 AC060773.1-201ENST00000421698 310 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.73□□□□□ -2.13
USP28Q96RU2 MTND5P22-201ENST00000458380 195 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 snoU13.15-201ENST00000459407 104 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 SNORA44.1-201ENST00000517031 108 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 MIR3198-2-201ENST00000577868 80 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 AL355297.3-201ENST00000604082 446 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 snoZ196.1-201ENST00000625269 89 ntBASIC1.73□□□□□ -2.13
USP28Q96RU2 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USP28Q96RU2 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.72□□□□□ -2.13
USP28Q96RU2 RNU6-1309P-201ENST00000363305 108 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 RNA5SP493-201ENST00000364115 91 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 Y_RNA.380-201ENST00000365663 111 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 Y_RNA.570-201ENST00000384750 101 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 RNU6-1105P-201ENST00000384774 107 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 RN7SKP284-201ENST00000411002 343 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 RNU6-1199P-201ENST00000411249 104 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.72□□□□□ -2.13
USP28Q96RU2 AL358176.2-201ENST00000425769 204 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.72□□□□□ -2.13
USP28Q96RU2 AC073910.1-201ENST00000445047 438 ntBASIC1.72□□□□□ -2.13
USP28Q96RU2 NDUFB4P10-201ENST00000452541 359 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms