Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 AC093023.1-201ENST00000547375 507 ntBASIC0.9□□□□□ -2.27
RPRD1AQ96P16 FAM106DP-201ENST00000586416 501 ntBASIC0.9□□□□□ -2.27
RPRD1AQ96P16 AC211469.2-201ENST00000605461 205 ntBASIC0.9□□□□□ -2.27
RPRD1AQ96P16 MIR373-201ENST00000362273 69 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.265-201ENST00000364677 108 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 RNU6-1148P-201ENST00000410992 104 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 RNU6-1001P-201ENST00000411265 100 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 AC002429.1-201ENST00000437672 148 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 AC093850.1-201ENST00000454121 251 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 SNORD124-201ENST00000459577 104 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 AC091021.1-201ENST00000468051 388 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 OR9P1P-201ENST00000496431 281 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 AC018710.1-201ENST00000506509 158 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 SNORD79.1-201ENST00000516069 84 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 RNU6-947P-201ENST00000516264 106 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 RNU6-1088P-201ENST00000516850 104 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 AC109635.3-201ENST00000529536 185 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.89□□□□□ -2.27
RPRD1AQ96P16 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.89□□□□□ -2.27
RPRD1AQ96P16 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
RPRD1AQ96P16 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.88□□□□□ -2.27
RPRD1AQ96P16 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
RPRD1AQ96P16 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.116-201ENST00000363292 103 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.194-201ENST00000363985 102 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 SNORD12-201ENST00000391002 90 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 AL451046.2-201ENST00000403074 277 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 USMG5P1-201ENST00000425964 177 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 USP9YP16-201ENST00000430287 407 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 USP9YP30-201ENST00000430729 455 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 USP9YP23-201ENST00000455085 407 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 AC046134.1-201ENST00000514454 666 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 RNU6-1314P-201ENST00000517139 104 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 AC024909.2-201ENST00000553035 286 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 AC245505.1-201ENST00000556398 224 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 AC091178.2-201ENST00000584401 117 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 AC125232.2-201ENST00000592457 143 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 FAM71BP1-201ENST00000604431 523 ntBASIC0.88□□□□□ -2.27
RPRD1AQ96P16 AC005592.1-201ENST00000566527 1640 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 SNORA1B-201ENST00000362535 133 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.48-201ENST00000362710 103 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.106-201ENST00000363189 100 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.124-201ENST00000363339 93 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.267-201ENST00000364679 109 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 RNU6-842P-201ENST00000384269 107 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.490-201ENST00000384413 102 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 RNU6-831P-201ENST00000384548 107 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.517-201ENST00000384551 106 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 RNU11-5P-201ENST00000391216 129 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.87□□□□□ -2.27
RPRD1AQ96P16 MTND3P21-201ENST00000433774 331 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 RPS29P1-201ENST00000465274 159 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 RNU2-56P-201ENST00000516826 190 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.87□□□□□ -2.27
RPRD1AQ96P16 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.87□□□□□ -2.27
RPRD1AQ96P16 AL078603.1-201ENST00000603824 313 ntBASIC0.87□□□□□ -2.27
RPRD1AQ96P16 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.87□□□□□ -2.27
RPRD1AQ96P16 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
RPRD1AQ96P16 SNORA2.2-201ENST00000365473 135 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.402-201ENST00000383972 102 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 RNU6-373P-201ENST00000411247 98 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 ELOCP21-201ENST00000412558 336 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 AC114482.1-201ENST00000418010 247 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 AC018865.2-201ENST00000423631 129 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 AC022493.2-201ENST00000506122 481 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.86□□□□□ -2.27
RPRD1AQ96P16 SCARNA16.2-201ENST00000516520 172 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.706-201ENST00000516933 99 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 RNU6-341P-201ENST00000516973 96 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 MIR4653-201ENST00000585107 83 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 AL117336.2-201ENST00000602435 335 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 AC100812.1-201ENST00000607622 580 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 AL357075.2-201ENST00000614906 189 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 MTND5P16-201ENST00000460269 1703 ntBASIC0.86□□□□□ -2.27
RPRD1AQ96P16 SNORD114-2-201ENST00000363953 78 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 Y_RNA.269-201ENST00000364685 89 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 RNU6-407P-201ENST00000365280 104 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 RNU6-1264P-201ENST00000383891 107 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 MIR518E-201ENST00000385252 88 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.85□□□□□ -2.27
RPRD1AQ96P16 MTND1P17-201ENST00000448961 204 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 RPS26P48-201ENST00000491713 339 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 RNA5SP20-201ENST00000515976 84 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 RNU6-322P-201ENST00000516010 103 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 ACA64.5-201ENST00000516207 127 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 RNU7-28P-201ENST00000516759 62 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 RPL21P9-201ENST00000556149 474 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.85□□□□□ -2.27
RPRD1AQ96P16 AC048344.4-201ENST00000619744 527 ntBASIC0.85□□□□□ -2.27
RPRD1AQ96P16 MIRLET7C-201ENST00000362160 84 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 SNORA27.1-201ENST00000362604 124 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.84□□□□□ -2.27
RPRD1AQ96P16 RNU6-969P-201ENST00000383900 105 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 MIR181A1-201ENST00000385026 110 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 MIR329-1-201ENST00000385028 80 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 RNU2-64P-201ENST00000411315 191 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 EIF1P2-201ENST00000428233 350 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 AC104332.1-201ENST00000440471 797 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 RPS4XP11-201ENST00000446897 772 ntBASIC0.84□□□□□ -2.27
RPRD1AQ96P16 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 182.3 ms