Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL355796.1-201ENST00000406706 323 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 RNU4-62P-201ENST00000410125 130 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS39Q96JC1 AC008134.1-201ENST00000420943 193 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 MRPS18CP6-201ENST00000423587 223 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS39Q96JC1 AC108667.1-201ENST00000428618 249 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS39Q96JC1 AC105758.1-201ENST00000506038 399 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS39Q96JC1 SNORA31.10-201ENST00000516482 106 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 AL512310.8-201ENST00000550183 120 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.29□□□□□ -2.2
VPS39Q96JC1 AL929325.1-201ENST00000603096 117 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 AC040896.1-201ENST00000613819 479 ntBASIC1.29□□□□□ -2.2
VPS39Q96JC1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
VPS39Q96JC1 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
VPS39Q96JC1 Y_RNA.595-201ENST00000410403 105 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.28□□□□□ -2.2
VPS39Q96JC1 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.28□□□□□ -2.2
VPS39Q96JC1 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.28□□□□□ -2.2
VPS39Q96JC1 UQCRBP2-201ENST00000447827 297 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 NDUFB4P10-201ENST00000452541 359 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 RPL30P15-201ENST00000457129 321 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 MIR2053-201ENST00000459295 91 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 AC004223.1-201ENST00000479840 271 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.28□□□□□ -2.2
VPS39Q96JC1 RNU6-507P-201ENST00000516045 100 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 RNU6-559P-201ENST00000516151 98 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 RNU6-277P-201ENST00000516272 106 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.28□□□□□ -2.2
VPS39Q96JC1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.28□□□□□ -2.2
VPS39Q96JC1 AL365434.2-201ENST00000607979 234 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 U6.73-201ENST00000619194 103 ntBASIC1.28□□□□□ -2.2
VPS39Q96JC1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
VPS39Q96JC1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VPS39Q96JC1 RNA5SP432-201ENST00000362480 116 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 SNORA72.1-201ENST00000363485 129 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 Y_RNA.142-201ENST00000363491 102 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 RNU6-454P-201ENST00000364292 107 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 SNORD116-29-201ENST00000384516 83 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 RNU6-1156P-201ENST00000410365 100 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 TOMM22P2-201ENST00000430735 237 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 AC015922.2-201ENST00000435593 184 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 AC009474.2-201ENST00000451383 136 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS39Q96JC1 RNU7-169P-201ENST00000459456 61 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 AC010469.2-201ENST00000496412 480 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 AC091951.2-201ENST00000500762 203 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.27□□□□□ -2.21
VPS39Q96JC1 RNU1-142P-201ENST00000516682 145 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 AL442163.3-201ENST00000554110 156 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 AC025253.1-201ENST00000613623 543 ntBASIC1.27□□□□□ -2.21
VPS39Q96JC1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.27□□□□□ -2.21
VPS39Q96JC1 RNU6-1301P-201ENST00000362724 104 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 SNORA20B-201ENST00000384220 132 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 SNORA12.1-201ENST00000390873 148 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 SNORA75.6-201ENST00000391318 127 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 AC096644.2-201ENST00000429278 159 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 PCNPP5-201ENST00000452246 481 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 RNU7-34P-201ENST00000459394 64 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 AC090821.2-201ENST00000523552 176 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 AC018448.1-201ENST00000552843 316 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 DNAJC19P9-201ENST00000555084 351 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 AC055872.1-201ENST00000570978 278 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 MIR4421-201ENST00000578133 69 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 AC005899.2-201ENST00000584353 90 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 AC113139.1-201ENST00000605049 239 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 AL359075.3-201ENST00000613288 217 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 AC104260.1-201ENST00000616660 539 ntBASIC1.26□□□□□ -2.21
VPS39Q96JC1 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.25□□□□□ -2.21
VPS39Q96JC1 MIR378A-201ENST00000362177 66 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 RNU6-926P-201ENST00000384075 107 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 RNU6-708P-201ENST00000384217 107 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 SNORD12B-201ENST00000410433 91 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.25□□□□□ -2.21
VPS39Q96JC1 AC114482.1-201ENST00000418010 247 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.25□□□□□ -2.21
VPS39Q96JC1 RNU7-95P-201ENST00000459222 64 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 RPS27P22-201ENST00000478056 241 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 AL133373.1-201ENST00000497098 94 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 SNORA40.9-201ENST00000515895 93 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 RN7SKP179-201ENST00000516126 217 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 RNU7-40P-201ENST00000516397 64 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 RN7SKP88-201ENST00000516847 250 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.25□□□□□ -2.21
VPS39Q96JC1 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.25□□□□□ -2.21
VPS39Q96JC1 MIR3660-201ENST00000584845 100 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 MIR4438-201ENST00000585271 93 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 7SK.8-201ENST00000612110 250 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 7SK.11-201ENST00000615477 250 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 AC084781.2-201ENST00000615568 161 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 7SK.13-201ENST00000622040 250 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.25□□□□□ -2.21
VPS39Q96JC1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
VPS39Q96JC1 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.25□□□□□ -2.21
VPS39Q96JC1 RNU6-1123P-201ENST00000362347 106 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 RNU6-961P-201ENST00000363893 105 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 RNA5SP259-201ENST00000365541 109 ntBASIC1.24□□□□□ -2.21
VPS39Q96JC1 SNORA70.7-201ENST00000384159 133 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms