Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 Y_RNA.243-201ENST00000364481 109 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 SNORA16.1-201ENST00000364597 132 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 RNU6-1240P-201ENST00000365155 104 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 RNU6-20P-201ENST00000384106 107 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 Y_RNA.439-201ENST00000384119 94 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 Y_RNA.527-201ENST00000384573 102 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 MIR583-201ENST00000384846 75 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 HMGN2P3-201ENST00000433603 273 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 HMGN2P5-201ENST00000436882 273 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 AC010655.3-201ENST00000478818 450 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 AC025465.3-201ENST00000510570 311 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 SCARNA15.1-201ENST00000516384 125 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 AC110588.1-201ENST00000559699 137 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 AC022441.3-201ENST00000605737 136 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 MIR338-201ENST00000636369 67 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 AC008555.8-201ENST00000623602 2168 ntBASIC2.17□□□□□ -2.06
SYNE3Q6ZMZ3 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 snoU2-30.2-201ENST00000362805 70 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 SNORD115-3-201ENST00000363100 82 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 RNU6-626P-201ENST00000363354 107 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 MIR606-201ENST00000384851 96 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 MIR597-201ENST00000384968 97 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 SNORA48.1-201ENST00000390879 135 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 RNU6-1199P-201ENST00000411249 104 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 AL390729.2-201ENST00000416137 156 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 HMGN2P34-201ENST00000437647 269 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 RNU6-107P-201ENST00000516643 102 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 AC005176.2-201ENST00000596933 147 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 U6.115-201ENST00000636045 103 ntBASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
SYNE3Q6ZMZ3 Y_RNA.101-201ENST00000363154 102 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 Y_RNA.145-201ENST00000363527 102 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 SNORD115-30-201ENST00000364117 82 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 Y_RNA.287-201ENST00000364853 94 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 MIR676-201ENST00000390702 67 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 MIR548F4-201ENST00000408515 105 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 RNU2-54P-201ENST00000410299 190 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 RNA5SP475-201ENST00000410568 110 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 AC113618.1-201ENST00000416747 285 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 AC099677.2-201ENST00000436385 175 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 RNU6-1146P-201ENST00000516282 102 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 AC136932.1-201ENST00000574771 208 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 AL353621.2-201ENST00000605340 133 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 AC004467.1-201ENST00000615678 330 ntBASIC2.15□□□□□ -2.07
SYNE3Q6ZMZ3 RNU11-3P-201ENST00000391111 133 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 SNORA40.18-201ENST00000391200 128 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 RPL21P1-201ENST00000399532 476 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 RNU5A-5P-201ENST00000411054 116 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 CST2P1-201ENST00000425770 87 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 SNORD65B-201ENST00000459126 73 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 snoU13.26-201ENST00000459452 105 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 AC010598.1-201ENST00000510378 103 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 RNU6-897P-201ENST00000517135 105 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 AC131281.1-201ENST00000522984 164 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 MIR4300-201ENST00000581016 96 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 AC012493.3-201ENST00000604494 112 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 AC006001.4-201ENST00000622243 395 ntBASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
SYNE3Q6ZMZ3 RNU6-1266P-201ENST00000362794 105 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 MIR515-2-201ENST00000384883 83 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 MIR515-1-201ENST00000384884 83 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 SNORD115-46-201ENST00000390982 71 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 AL512604.1-201ENST00000404812 257 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 AL355796.1-201ENST00000406706 323 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 HMGN2P19-201ENST00000425149 265 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 HMGB3P17-201ENST00000504195 649 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 RNU6-966P-201ENST00000516479 104 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 Y_RNA.720-201ENST00000517166 92 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 AC005034.5-201ENST00000604219 466 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.13□□□□□ -2.07
SYNE3Q6ZMZ3 Y_RNA.214-201ENST00000364201 112 ntBASIC2.12□□□□□ -2.07
SYNE3Q6ZMZ3 AC003989.2-201ENST00000440224 169 ntBASIC2.12□□□□□ -2.07
SYNE3Q6ZMZ3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.12□□□□□ -2.07
SYNE3Q6ZMZ3 RNU6-1041P-201ENST00000516254 102 ntBASIC2.12□□□□□ -2.07
SYNE3Q6ZMZ3 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.12□□□□□ -2.07
SYNE3Q6ZMZ3 AC127459.3-201ENST00000624328 466 ntBASIC2.12□□□□□ -2.07
SYNE3Q6ZMZ3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
SYNE3Q6ZMZ3 SNORA27.1-201ENST00000362604 124 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 Y_RNA.152-201ENST00000363578 100 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 RNU1-96P-201ENST00000364163 162 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 RNU6-1175P-201ENST00000365200 107 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 Y_RNA.446-201ENST00000384178 104 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 SNORA20B-201ENST00000384220 132 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 RNA5SP501-201ENST00000410990 112 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 ELOCP20-201ENST00000422460 345 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 AC096920.1-201ENST00000423991 241 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 AC005042.3-201ENST00000453230 174 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 MTND5P22-201ENST00000458380 195 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 RPS26P45-201ENST00000471748 340 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 RNU7-128P-201ENST00000517247 62 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 SUB1P4-201ENST00000566062 339 ntBASIC2.11□□□□□ -2.07
SYNE3Q6ZMZ3 MIR4419B-201ENST00000577260 68 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms