Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 Y_RNA.421-201ENST00000384052 101 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 RNU6-364P-201ENST00000384387 107 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 MIR1185-2-201ENST00000408687 86 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AL512326.2-201ENST00000426359 151 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 MTATP6P16-201ENST00000434543 526 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AC091021.1-201ENST00000468051 388 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AP000870.1-201ENST00000472927 406 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AC108729.2-201ENST00000476543 840 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AP001836.1-201ENST00000604675 523 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 RNU6-1084P-201ENST00000362498 107 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 RNA5SP517-201ENST00000364724 117 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.465-201ENST00000384293 102 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 MIR106A-201ENST00000384870 81 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 MIR562-201ENST00000384894 95 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 MTND3P20-201ENST00000407663 186 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 RNU6-387P-201ENST00000411331 105 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AC008134.1-201ENST00000420943 193 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AC015818.7-201ENST00000428754 109 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AC087499.7-201ENST00000441958 109 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AL031274.1-201ENST00000450334 232 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AC026782.1-201ENST00000512952 449 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AL450270.1-201ENST00000606160 391 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AC072039.2-201ENST00000608883 439 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 MIR15B-201ENST00000385045 98 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 RNY4P36-201ENST00000391116 96 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 RNA5SP482-201ENST00000391269 118 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 SNORA26-201ENST00000391286 122 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 MIR1298-201ENST00000408783 112 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 RPS24P1-201ENST00000438550 371 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 ZNF736P4Y-201ENST00000454995 1243 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 RNU7-12P-201ENST00000516030 62 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 SNORA43.4-201ENST00000629559 138 ntBASIC-0.3□□□□□ -2.46
CHD9Q3L8U1 RNU6-137P-201ENST00000363680 108 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 RNY1P7-201ENST00000384743 110 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 RN7SKP19-201ENST00000516016 252 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC091178.2-201ENST00000584401 117 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 MIR4438-201ENST00000585271 93 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC068790.2-201ENST00000602601 557 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC013437.2-201ENST00000639587 677 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 RNU6-424P-201ENST00000384367 105 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC078809.1-201ENST00000427601 140 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AL117351.1-201ENST00000438864 766 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 EXOSC3P1-201ENST00000448649 500 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 RNU6-334P-201ENST00000517072 102 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 RNU6-692P-201ENST00000384496 107 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 MIR548H2-201ENST00000408874 88 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 EEF1A1P40-201ENST00000412883 573 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC098592.1-201ENST00000419352 333 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 MTND4P32-201ENST00000437189 1237 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 RNU6-732P-201ENST00000516033 103 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 RNU6-1291P-201ENST00000516591 104 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AP002360.4-201ENST00000606980 481 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC097478.2-201ENST00000610572 514 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC091912.2-201ENST00000624798 167 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 snoZ196.1-201ENST00000625269 89 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 AC019226.2-201ENST00000625973 424 ntBASIC-0.31□□□□□ -2.46
CHD9Q3L8U1 RNU6-726P-201ENST00000364680 107 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 RNU6-723P-201ENST00000383973 107 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 RNU6-607P-201ENST00000411283 108 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 MCFD2P1-201ENST00000417812 300 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 USP9YP11-201ENST00000427537 717 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 MTCO1P5-201ENST00000433573 344 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 RNU7-182P-201ENST00000459009 62 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 RNU6-983P-201ENST00000516004 103 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 RNY4-201ENST00000516507 96 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 AC090897.1-201ENST00000580909 226 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 AP000907.4-201ENST00000604143 237 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 AC104260.1-201ENST00000616660 539 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 Six3os1_7.1-201ENST00000621512 201 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 AC010608.3-201ENST00000625048 527 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.172-201ENST00000363765 102 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 SNORD14C-201ENST00000365382 88 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 RNU6-190P-201ENST00000384154 102 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 SNORD38C-201ENST00000384381 69 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.576-201ENST00000384781 102 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 PIGPP3-201ENST00000425307 415 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 AC006600.1-201ENST00000572529 153 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 AC087683.1-201ENST00000591187 441 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-0.32□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 189.8 ms