Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP002001.1-203ENST00000534002 267 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.97□□□□□ -2.09
COL28A1Q2UY09 AL356055.1-201ENST00000602528 446 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 uc_338.20-201ENST00000621563 178 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 AC091812.1-201ENST00000432235 1948 ntBASIC1.97□□□□□ -2.09
COL28A1Q2UY09 Y_RNA.158-201ENST00000363651 101 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 RNU6-961P-201ENST00000363893 105 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.645-201ENST00000391229 102 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 RNA5SP338-201ENST00000410495 85 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 AL445685.2-201ENST00000422551 342 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.96□□□□□ -2.1
COL28A1Q2UY09 AC099677.2-201ENST00000436385 175 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 RNU6-1041P-201ENST00000516254 102 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 RNU1-40P-201ENST00000516816 164 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 RNU1-97P-201ENST00000516872 164 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.96□□□□□ -2.1
COL28A1Q2UY09 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.96□□□□□ -2.1
COL28A1Q2UY09 AC005828.6-201ENST00000606610 232 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 AC006001.4-201ENST00000622243 395 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
COL28A1Q2UY09 ZNF702P-202ENST00000434269 1966 ntBASIC1.96□□□□□ -2.1
COL28A1Q2UY09 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
COL28A1Q2UY09 SNORD114-7-201ENST00000362520 77 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.424-201ENST00000384063 103 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 RNU6-926P-201ENST00000384075 107 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.458-201ENST00000384240 102 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 MIR17-201ENST00000385012 84 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
COL28A1Q2UY09 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.95□□□□□ -2.1
COL28A1Q2UY09 AC010598.1-201ENST00000510378 103 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 SUB1P4-201ENST00000566062 339 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.772-201ENST00000606692 102 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.95□□□□□ -2.1
COL28A1Q2UY09 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL28A1Q2UY09 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL28A1Q2UY09 AL359851.1-201ENST00000569460 4997 ntBASIC1.95□□□□□ -2.1
COL28A1Q2UY09 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.94□□□□□ -2.1
COL28A1Q2UY09 RNU6-454P-201ENST00000364292 107 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.287-201ENST00000364853 94 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 RNU6-42P-201ENST00000384165 107 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.462-201ENST00000384268 102 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 SNORA8-201ENST00000384574 139 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.551-201ENST00000384661 102 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 MIR1253-201ENST00000408273 105 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.94□□□□□ -2.1
COL28A1Q2UY09 RPEP5-201ENST00000441137 268 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 SNORD65B-201ENST00000459126 73 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 U8.20-201ENST00000459445 131 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 AC025033.1-201ENST00000463883 194 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 RNVU1-2-201ENST00000516326 135 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 SNORA25.15-201ENST00000516487 89 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 AC024995.1-201ENST00000523014 93 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 AL442663.2-201ENST00000554385 511 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 MIR4423-201ENST00000580922 80 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 MIR3935-201ENST00000583472 104 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 AC069114.2-201ENST00000604699 304 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.783-201ENST00000613546 102 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 AC022140.2-201ENST00000623500 188 ntBASIC1.94□□□□□ -2.1
COL28A1Q2UY09 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.94□□□□□ -2.1
COL28A1Q2UY09 RNU6-862P-201ENST00000362804 105 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 RNU6-694P-201ENST00000364071 147 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 RNU1-96P-201ENST00000364163 162 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.243-201ENST00000364481 109 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 SNORA72.2-201ENST00000365028 127 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.361-201ENST00000365515 120 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 RNU6-20P-201ENST00000384106 107 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 RNU6-823P-201ENST00000391042 103 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 RNA5SP212-201ENST00000391223 107 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 MIR1276-201ENST00000408707 83 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 AL356379.1-201ENST00000414105 126 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.93□□□□□ -2.1
COL28A1Q2UY09 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.93□□□□□ -2.1
COL28A1Q2UY09 RNU6-1153P-201ENST00000516760 105 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 RNU2-12P-201ENST00000517216 168 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
COL28A1Q2UY09 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.93□□□□□ -2.1
COL28A1Q2UY09 AL137100.2-201ENST00000555786 315 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 MIR4719-201ENST00000585233 84 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 AC005176.2-201ENST00000596933 147 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.93□□□□□ -2.1
COL28A1Q2UY09 AC104695.3-201ENST00000604052 296 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 MIR6504-201ENST00000613520 61 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 AC011476.5-201ENST00000615594 130 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 AC004467.1-201ENST00000615678 330 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 ZNF355P-201ENST00000427301 3216 ntBASIC1.93□□□□□ -2.1
COL28A1Q2UY09 RNU6-626P-201ENST00000363354 107 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.216-201ENST00000364205 93 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 RNU6-1019P-201ENST00000364424 107 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 SNORA33.2-201ENST00000365413 134 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.380-201ENST00000365663 111 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 SNORD63-201ENST00000384262 68 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 RNU6-1011P-201ENST00000384668 107 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 AC009310.1-201ENST00000414414 451 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 AL390729.2-201ENST00000416137 156 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 RPL23AP7-203ENST00000449021 469 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 RNA5SP233-201ENST00000459153 113 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 RPS27P21-201ENST00000486977 252 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms