Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.83□□□□□ -2.12
LMO4P61968 AC009831.4-201ENST00000620744 325 ntBASIC1.83□□□□□ -2.12
LMO4P61968 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
LMO4P61968 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.83□□□□□ -2.12
LMO4P61968 ZNF271P-202ENST00000465539 1970 ntBASIC1.83□□□□□ -2.12
LMO4P61968 Z82195.2-201ENST00000612348 18351 ntBASIC1.82□□□□□ -2.12
LMO4P61968 Z82209.1-201ENST00000422141 2135 ntBASIC1.82□□□□□ -2.12
LMO4P61968 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
LMO4P61968 snoU2_19.1-201ENST00000362361 80 ntBASIC1.82□□□□□ -2.12
LMO4P61968 Y_RNA.217-201ENST00000364214 105 ntBASIC1.82□□□□□ -2.12
LMO4P61968 SNORA18.2-201ENST00000383865 132 ntBASIC1.82□□□□□ -2.12
LMO4P61968 SNORA67.3-201ENST00000384366 140 ntBASIC1.82□□□□□ -2.12
LMO4P61968 MIR95-201ENST00000385072 81 ntBASIC1.82□□□□□ -2.12
LMO4P61968 MIR320B2-201ENST00000408479 138 ntBASIC1.82□□□□□ -2.12
LMO4P61968 SNORA11.4-201ENST00000408823 129 ntBASIC1.82□□□□□ -2.12
LMO4P61968 RNU2-54P-201ENST00000410299 190 ntBASIC1.82□□□□□ -2.12
LMO4P61968 RNA5SP504-201ENST00000410676 117 ntBASIC1.82□□□□□ -2.12
LMO4P61968 RNA5SP270-201ENST00000411361 118 ntBASIC1.82□□□□□ -2.12
LMO4P61968 COX6CP10-201ENST00000416832 224 ntBASIC1.82□□□□□ -2.12
LMO4P61968 AC027124.2-201ENST00000428249 105 ntBASIC1.82□□□□□ -2.12
LMO4P61968 AC004386.2-201ENST00000441858 148 ntBASIC1.82□□□□□ -2.12
LMO4P61968 Y_RNA.638-201ENST00000459374 113 ntBASIC1.82□□□□□ -2.12
LMO4P61968 Y_RNA.641-201ENST00000459414 105 ntBASIC1.82□□□□□ -2.12
LMO4P61968 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.82□□□□□ -2.12
LMO4P61968 RNU6-191P-201ENST00000516295 94 ntBASIC1.82□□□□□ -2.12
LMO4P61968 HSPE1P18-201ENST00000517602 280 ntBASIC1.82□□□□□ -2.12
LMO4P61968 AC022559.1-201ENST00000520905 205 ntBASIC1.82□□□□□ -2.12
LMO4P61968 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.82□□□□□ -2.12
LMO4P61968 EIF4A1P12-201ENST00000551910 141 ntBASIC1.82□□□□□ -2.12
LMO4P61968 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.82□□□□□ -2.12
LMO4P61968 MIR3126-201ENST00000577443 74 ntBASIC1.82□□□□□ -2.12
LMO4P61968 DEFB117-201ENST00000602356 141 ntBASIC1.82□□□□□ -2.12
LMO4P61968 AC005562.2-201ENST00000618264 111 ntBASIC1.82□□□□□ -2.12
LMO4P61968 MIR3674-201ENST00000636576 68 ntBASIC1.82□□□□□ -2.12
LMO4P61968 MIR219B-201ENST00000637023 88 ntBASIC1.82□□□□□ -2.12
LMO4P61968 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
LMO4P61968 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
LMO4P61968 AC092881.1-201ENST00000638218 2733 ntBASIC1.81□□□□□ -2.12
LMO4P61968 RNA5SP432-201ENST00000362480 116 ntBASIC1.81□□□□□ -2.12
LMO4P61968 RNU6-545P-201ENST00000362681 104 ntBASIC1.81□□□□□ -2.12
LMO4P61968 RNU6-774P-201ENST00000363238 107 ntBASIC1.81□□□□□ -2.12
LMO4P61968 RNU6-1020P-201ENST00000363684 107 ntBASIC1.81□□□□□ -2.12
LMO4P61968 U3.9-201ENST00000363823 204 ntBASIC1.81□□□□□ -2.12
LMO4P61968 SNORA3A-201ENST00000364113 130 ntBASIC1.81□□□□□ -2.12
LMO4P61968 DEFA7P-201ENST00000382676 285 ntBASIC1.81□□□□□ -2.12
LMO4P61968 RNU1-148P-201ENST00000384472 162 ntBASIC1.81□□□□□ -2.12
LMO4P61968 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.81□□□□□ -2.12
LMO4P61968 AC011753.1-201ENST00000451001 220 ntBASIC1.81□□□□□ -2.12
LMO4P61968 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.81□□□□□ -2.12
LMO4P61968 AC074198.2-201ENST00000508153 258 ntBASIC1.81□□□□□ -2.12
LMO4P61968 HMGB3P3-201ENST00000510526 400 ntBASIC1.81□□□□□ -2.12
LMO4P61968 SCARNA16.3-201ENST00000516595 184 ntBASIC1.81□□□□□ -2.12
LMO4P61968 RNU6-861P-201ENST00000516745 106 ntBASIC1.81□□□□□ -2.12
LMO4P61968 RNU6-255P-201ENST00000516957 105 ntBASIC1.81□□□□□ -2.12
LMO4P61968 AC087441.2-201ENST00000529141 262 ntBASIC1.81□□□□□ -2.12
LMO4P61968 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.81□□□□□ -2.12
LMO4P61968 AL137100.2-201ENST00000555786 315 ntBASIC1.81□□□□□ -2.12
LMO4P61968 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
LMO4P61968 MIR4446-201ENST00000578505 67 ntBASIC1.81□□□□□ -2.12
LMO4P61968 AC005828.6-201ENST00000606610 232 ntBASIC1.81□□□□□ -2.12
LMO4P61968 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
LMO4P61968 MIR6132-201ENST00000622083 109 ntBASIC1.81□□□□□ -2.12
LMO4P61968 AC010297.1-201ENST00000623948 149 ntBASIC1.81□□□□□ -2.12
LMO4P61968 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.81□□□□□ -2.12
LMO4P61968 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
LMO4P61968 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
LMO4P61968 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
LMO4P61968 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
LMO4P61968 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
LMO4P61968 MIR6073-201ENST00000352083 89 ntBASIC1.8□□□□□ -2.12
LMO4P61968 RNU6-454P-201ENST00000364292 107 ntBASIC1.8□□□□□ -2.12
LMO4P61968 RNU6-923P-201ENST00000364753 107 ntBASIC1.8□□□□□ -2.12
LMO4P61968 SNORD87-201ENST00000364849 89 ntBASIC1.8□□□□□ -2.12
LMO4P61968 RNU6-1264P-201ENST00000383891 107 ntBASIC1.8□□□□□ -2.12
LMO4P61968 RNU1-138P-201ENST00000384093 164 ntBASIC1.8□□□□□ -2.12
LMO4P61968 Y_RNA.464-201ENST00000384282 110 ntBASIC1.8□□□□□ -2.12
LMO4P61968 MIR29B2-201ENST00000385055 81 ntBASIC1.8□□□□□ -2.12
LMO4P61968 SNORA12-201ENST00000391162 147 ntBASIC1.8□□□□□ -2.12
LMO4P61968 AL023284.1-201ENST00000403956 276 ntBASIC1.8□□□□□ -2.12
LMO4P61968 MIR1289-2-201ENST00000408360 111 ntBASIC1.8□□□□□ -2.12
LMO4P61968 Y_RNA.597-201ENST00000410463 100 ntBASIC1.8□□□□□ -2.12
LMO4P61968 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.8□□□□□ -2.12
LMO4P61968 HMGN2P3-201ENST00000433603 273 ntBASIC1.8□□□□□ -2.12
LMO4P61968 HMGN2P5-201ENST00000436882 273 ntBASIC1.8□□□□□ -2.12
LMO4P61968 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.8□□□□□ -2.12
LMO4P61968 RNY3P16-201ENST00000516338 101 ntBASIC1.8□□□□□ -2.12
LMO4P61968 RNU6-344P-201ENST00000516635 111 ntBASIC1.8□□□□□ -2.12
LMO4P61968 RNU1-117P-201ENST00000517041 158 ntBASIC1.8□□□□□ -2.12
LMO4P61968 RNU2-12P-201ENST00000517216 168 ntBASIC1.8□□□□□ -2.12
LMO4P61968 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.8□□□□□ -2.12
LMO4P61968 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.8□□□□□ -2.12
LMO4P61968 SNORD11B-201ENST00000607707 90 ntBASIC1.8□□□□□ -2.12
LMO4P61968 AC073349.3-201ENST00000617616 186 ntBASIC1.8□□□□□ -2.12
LMO4P61968 RNU6-1272P-201ENST00000362776 107 ntBASIC1.79□□□□□ -2.12
LMO4P61968 RNU1-23P-201ENST00000363361 144 ntBASIC1.79□□□□□ -2.12
LMO4P61968 Y_RNA.329-201ENST00000365209 107 ntBASIC1.79□□□□□ -2.12
LMO4P61968 RNU6-1310P-201ENST00000384153 107 ntBASIC1.79□□□□□ -2.12
LMO4P61968 SNORA48.3-201ENST00000391081 134 ntBASIC1.79□□□□□ -2.12
LMO4P61968 RNU6-918P-201ENST00000391219 106 ntBASIC1.79□□□□□ -2.12
LMO4P61968 RN7SKP51-201ENST00000410781 304 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms