Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AF235103.2-201ENST00000525753 346 ntBASIC0.99□□□□□ -2.25
PKNOX1P55347 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.99□□□□□ -2.25
PKNOX1P55347 AC091178.2-201ENST00000584401 117 ntBASIC0.99□□□□□ -2.25
PKNOX1P55347 AL162424.1-201ENST00000602325 221 ntBASIC0.99□□□□□ -2.25
PKNOX1P55347 AC009229.3-201ENST00000608056 282 ntBASIC0.99□□□□□ -2.25
PKNOX1P55347 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.99□□□□□ -2.25
PKNOX1P55347 AC027335.2-201ENST00000624030 375 ntBASIC0.99□□□□□ -2.25
PKNOX1P55347 AC073869.6-201ENST00000640656 341 ntBASIC0.99□□□□□ -2.25
PKNOX1P55347 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
PKNOX1P55347 AC073544.1-201ENST00000600110 1595 ntBASIC0.99□□□□□ -2.25
PKNOX1P55347 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
PKNOX1P55347 MIR378A-201ENST00000362177 66 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 SNORA27.1-201ENST00000362604 124 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 RNU4-76P-201ENST00000364509 141 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 Y_RNA.404-201ENST00000383978 102 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 RNU6-700P-201ENST00000391043 107 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 AC018865.2-201ENST00000423631 129 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 MTCYBP10-201ENST00000424905 650 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 RAB28P5-201ENST00000427490 651 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 CALM2P4-201ENST00000430810 426 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.98□□□□□ -2.25
PKNOX1P55347 RNU7-87P-201ENST00000459343 62 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 AC087343.1-201ENST00000477341 475 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 RPL7P42-201ENST00000481005 679 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.98□□□□□ -2.25
PKNOX1P55347 SNORD116-28-201ENST00000516123 91 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 RNA5SP168-201ENST00000516642 112 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 RNA5SP404-201ENST00000517118 132 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.98□□□□□ -2.25
PKNOX1P55347 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.98□□□□□ -2.25
PKNOX1P55347 AC060780.3-201ENST00000589464 80 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 HSPE1P19-201ENST00000603327 295 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 BNIP3P10-201ENST00000605360 577 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 AL022345.2-201ENST00000606307 135 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 AC104260.1-201ENST00000616660 539 ntBASIC0.98□□□□□ -2.25
PKNOX1P55347 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
PKNOX1P55347 MIR410-201ENST00000362222 80 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 RNU1-124P-201ENST00000363861 145 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 RNU6-318P-201ENST00000384283 103 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 RNU6-424P-201ENST00000384367 105 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 SNORA25-201ENST00000384384 134 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 MIR653-201ENST00000385279 96 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 SNORD41-201ENST00000386967 70 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 U8.16-201ENST00000391279 133 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 MTND1P34-201ENST00000438556 671 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.97□□□□□ -2.25
PKNOX1P55347 MTND3P10-201ENST00000450967 341 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 OR9P1P-201ENST00000496431 281 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 AC074133.1-201ENST00000515696 183 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 RNA5SP20-201ENST00000515976 84 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 Y_RNA.708-201ENST00000516950 96 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 CYCSP23-201ENST00000519781 313 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 AC018448.1-201ENST00000552843 316 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 AL513534.2-201ENST00000603836 250 ntBASIC0.97□□□□□ -2.25
PKNOX1P55347 AL391516.1-201ENST00000554380 2449 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 AL391987.6-201ENST00000305671 199 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 SNORA1B-201ENST00000362535 133 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 Y_RNA.88-201ENST00000363029 99 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 RNU6-454P-201ENST00000364292 107 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 RNU6-879P-201ENST00000364328 108 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 RNU4-38P-201ENST00000364472 129 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 RNU6-407P-201ENST00000365280 104 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 Y_RNA.358-201ENST00000365491 99 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.96□□□□□ -2.26
PKNOX1P55347 RNU6-601P-201ENST00000384540 107 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
PKNOX1P55347 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.96□□□□□ -2.26
PKNOX1P55347 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.96□□□□□ -2.26
PKNOX1P55347 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.96□□□□□ -2.26
PKNOX1P55347 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.96□□□□□ -2.26
PKNOX1P55347 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.96□□□□□ -2.26
PKNOX1P55347 RN7SKP49-201ENST00000516675 260 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 AC005828.6-201ENST00000606610 232 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 SNORA28-201ENST00000606769 126 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 BX284668.6-201ENST00000606899 438 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.96□□□□□ -2.26
PKNOX1P55347 AC084782.3-201ENST00000612282 578 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 AC005858.4-201ENST00000623191 700 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 U6.115-201ENST00000636045 103 ntBASIC0.96□□□□□ -2.26
PKNOX1P55347 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.95□□□□□ -2.26
PKNOX1P55347 RNU6-199P-201ENST00000362954 107 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 Y_RNA.124-201ENST00000363339 93 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 MTCYBP4-201ENST00000401524 249 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.95□□□□□ -2.26
PKNOX1P55347 AL137792.2-201ENST00000443484 235 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 AC107399.1-201ENST00000451226 265 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 PCNPP5-201ENST00000452246 481 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 RNU6-917P-201ENST00000516294 104 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 RNU6-358P-201ENST00000516564 75 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 RNU6-341P-201ENST00000516973 96 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 AC022868.1-201ENST00000517767 391 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 MIR3684-201ENST00000579779 74 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 AC080078.2-201ENST00000603766 501 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 AC012676.2-201ENST00000619258 186 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 AC005592.1-201ENST00000566527 1640 ntBASIC0.95□□□□□ -2.26
PKNOX1P55347 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.95□□□□□ -2.26
PKNOX1P55347 RNA5SP99-201ENST00000364020 114 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 Y_RNA.265-201ENST00000364677 108 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms