Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR518C-201ENST00000384822 101 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 MIR676-201ENST00000390702 67 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 SUMO2P12-201ENST00000405924 140 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXA1P49639 MTCO1P5-201ENST00000433573 344 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 RPS15AP28-201ENST00000435088 386 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 AP001486.1-201ENST00000463339 476 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 MIR4319-201ENST00000577285 85 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 AC026271.5-201ENST00000577873 130 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 AL096840.1-201ENST00000603287 93 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 AP000942.4-201ENST00000604811 241 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 AC127459.3-201ENST00000624328 466 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
HOXA1P49639 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.85□□□□□ -2.11
HOXA1P49639 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.85□□□□□ -2.11
HOXA1P49639 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
HOXA1P49639 RNU6-23P-201ENST00000363283 107 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 RNU6-160P-201ENST00000384591 107 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 MIR634-201ENST00000385208 97 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 HMGN2P34-201ENST00000437647 269 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 AL135790.2-201ENST00000437701 267 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 RNU6-1132P-201ENST00000459214 107 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 AC234781.5-201ENST00000508429 271 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 AC011406.1-201ENST00000512440 370 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 RNU6-63P-201ENST00000516690 95 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 AC087441.2-201ENST00000529141 262 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 MIR3169-201ENST00000578032 83 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 MIR3162-201ENST00000581818 82 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 AC062037.2-201ENST00000610137 73 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.15-201ENST00000611544 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.16-201ENST00000613119 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.85□□□□□ -2.11
HOXA1P49639 U2.12-201ENST00000613778 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.20-201ENST00000613956 192 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.9-201ENST00000615427 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.11-201ENST00000616345 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.2-201ENST00000616535 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.3-201ENST00000617785 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.19-201ENST00000618602 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 RNU2-1-201ENST00000618664 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.6-201ENST00000619225 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.5-201ENST00000619465 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 U2.10-201ENST00000620268 191 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 AC022513.1-201ENST00000624512 117 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
HOXA1P49639 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
HOXA1P49639 AC016717.2-201ENST00000609089 5141 ntBASIC1.85□□□□□ -2.11
HOXA1P49639 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
HOXA1P49639 Y_RNA.14-201ENST00000362415 103 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 Y_RNA.287-201ENST00000364853 94 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 RNU6-1240P-201ENST00000365155 104 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 RNU6-651P-201ENST00000411040 105 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AL390729.2-201ENST00000416137 156 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AC025033.1-201ENST00000463883 194 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AC010409.1-201ENST00000487382 476 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 YWHAEP4-201ENST00000505390 198 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.84□□□□□ -2.11
HOXA1P49639 Y_RNA.673-201ENST00000516306 88 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 RNU7-193P-201ENST00000516723 65 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AC004817.2-201ENST00000561794 651 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 MIR3128-201ENST00000581957 66 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AC006023.1-201ENST00000603944 259 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AC103810.6-201ENST00000606708 136 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXA1P49639 MIR6766-201ENST00000622641 72 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 CTSLP2-204ENST00000629029 392 ntBASIC1.84□□□□□ -2.11
HOXA1P49639 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXA1P49639 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.12
HOXA1P49639 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
HOXA1P49639 Y_RNA.54-201ENST00000362766 105 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 RNU6-1266P-201ENST00000362794 105 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 Y_RNA.60-201ENST00000362831 98 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 SNORD27-201ENST00000363981 72 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 Y_RNA.447-201ENST00000384184 113 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 RNU6-662P-201ENST00000384253 104 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 MIR518A2-201ENST00000384966 87 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 RNA5SP467-201ENST00000391274 118 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 MIR1283-2-201ENST00000408621 87 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXA1P49639 HMGN2P3-201ENST00000433603 273 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 HMGN2P5-201ENST00000436882 273 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 KRTAP19-11P-201ENST00000439851 104 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 RPL23AP7-203ENST00000449021 469 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 AL109933.2-201ENST00000452651 260 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 RPS27P22-201ENST00000478056 241 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 AC091959.1-201ENST00000495857 238 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 SERF1AP1-201ENST00000514575 187 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 RNU2-34P-201ENST00000516534 121 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 RNU2-31P-201ENST00000516954 155 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.83□□□□□ -2.12
HOXA1P49639 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXA1P49639 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXA1P49639 AC005828.6-201ENST00000606610 232 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 AL627230.6-201ENST00000611129 280 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 MIR6817-201ENST00000615588 66 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 SCARNA15.3-201ENST00000626315 122 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 SCARNA4.1-201ENST00000628597 123 ntBASIC1.83□□□□□ -2.12
HOXA1P49639 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
HOXA1P49639 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXA1P49639 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 152.7 ms