Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-1080P-201ENST00000383982 107 ntBASIC0.93□□□□□ -2.26
RFX3P48380 Y_RNA.453-201ENST00000384223 109 ntBASIC0.93□□□□□ -2.26
RFX3P48380 MIR222-201ENST00000384992 110 ntBASIC0.93□□□□□ -2.26
RFX3P48380 MTCYBP4-201ENST00000401524 249 ntBASIC0.93□□□□□ -2.26
RFX3P48380 MTCO3P19-201ENST00000415864 321 ntBASIC0.93□□□□□ -2.26
RFX3P48380 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.93□□□□□ -2.26
RFX3P48380 USP9YP30-201ENST00000430729 455 ntBASIC0.93□□□□□ -2.26
RFX3P48380 RPS27P22-201ENST00000478056 241 ntBASIC0.93□□□□□ -2.26
RFX3P48380 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.93□□□□□ -2.26
RFX3P48380 RNA5SP220-201ENST00000516298 104 ntBASIC0.93□□□□□ -2.26
RFX3P48380 RNU6-273P-201ENST00000516937 96 ntBASIC0.93□□□□□ -2.26
RFX3P48380 AC091144.1-201ENST00000519573 138 ntBASIC0.93□□□□□ -2.26
RFX3P48380 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.93□□□□□ -2.26
RFX3P48380 AL513534.2-201ENST00000603836 250 ntBASIC0.93□□□□□ -2.26
RFX3P48380 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
RFX3P48380 RNU6-593P-201ENST00000364716 112 ntBASIC0.92□□□□□ -2.26
RFX3P48380 RNU6-42P-201ENST00000384165 107 ntBASIC0.92□□□□□ -2.26
RFX3P48380 RNU6-842P-201ENST00000384269 107 ntBASIC0.92□□□□□ -2.26
RFX3P48380 RNY1P14-201ENST00000384426 108 ntBASIC0.92□□□□□ -2.26
RFX3P48380 MIR660-201ENST00000385235 97 ntBASIC0.92□□□□□ -2.26
RFX3P48380 RNU6-510P-201ENST00000391239 108 ntBASIC0.92□□□□□ -2.26
RFX3P48380 RNU6-1148P-201ENST00000410992 104 ntBASIC0.92□□□□□ -2.26
RFX3P48380 AC010469.2-201ENST00000496412 480 ntBASIC0.92□□□□□ -2.26
RFX3P48380 RNU6-107P-201ENST00000516643 102 ntBASIC0.92□□□□□ -2.26
RFX3P48380 CBX3P8-201ENST00000532412 525 ntBASIC0.92□□□□□ -2.26
RFX3P48380 AC093023.1-201ENST00000547375 507 ntBASIC0.92□□□□□ -2.26
RFX3P48380 MIR4790-201ENST00000577799 79 ntBASIC0.92□□□□□ -2.26
RFX3P48380 AL021879.1-201ENST00000611756 288 ntBASIC0.92□□□□□ -2.26
RFX3P48380 MIR6128-201ENST00000615528 109 ntBASIC0.92□□□□□ -2.26
RFX3P48380 SNORD3E-202ENST00000627253 216 ntBASIC0.92□□□□□ -2.26
RFX3P48380 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.92□□□□□ -2.26
RFX3P48380 MIR3688-2-201ENST00000636963 87 ntBASIC0.92□□□□□ -2.26
RFX3P48380 Y_RNA.3-201ENST00000362331 103 ntBASIC0.91□□□□□ -2.26
RFX3P48380 RNU4-38P-201ENST00000364472 129 ntBASIC0.91□□□□□ -2.26
RFX3P48380 RNU1-93P-201ENST00000364704 169 ntBASIC0.91□□□□□ -2.26
RFX3P48380 SNORD114-22-201ENST00000365423 72 ntBASIC0.91□□□□□ -2.26
RFX3P48380 RNU6-1264P-201ENST00000383891 107 ntBASIC0.91□□□□□ -2.26
RFX3P48380 UBE2V1P7-201ENST00000446395 340 ntBASIC0.91□□□□□ -2.26
RFX3P48380 AC097462.1-201ENST00000514125 324 ntBASIC0.91□□□□□ -2.26
RFX3P48380 AC074133.1-201ENST00000515696 183 ntBASIC0.91□□□□□ -2.26
RFX3P48380 RNU7-28P-201ENST00000516759 62 ntBASIC0.91□□□□□ -2.26
RFX3P48380 SNORA70.22-201ENST00000517160 124 ntBASIC0.91□□□□□ -2.26
RFX3P48380 RPL21P9-201ENST00000556149 474 ntBASIC0.91□□□□□ -2.26
RFX3P48380 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.91□□□□□ -2.26
RFX3P48380 MIR5701-3-201ENST00000578890 82 ntBASIC0.91□□□□□ -2.26
RFX3P48380 SNORA4-201ENST00000584302 138 ntBASIC0.91□□□□□ -2.26
RFX3P48380 MIR5701-1-201ENST00000585138 82 ntBASIC0.91□□□□□ -2.26
RFX3P48380 AL078603.1-201ENST00000603824 313 ntBASIC0.91□□□□□ -2.26
RFX3P48380 AL020996.3-201ENST00000606617 222 ntBASIC0.91□□□□□ -2.26
RFX3P48380 MIR5701-2-201ENST00000615634 82 ntBASIC0.91□□□□□ -2.26
RFX3P48380 AC106754.2-201ENST00000623006 233 ntBASIC0.91□□□□□ -2.26
RFX3P48380 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.9□□□□□ -2.27
RFX3P48380 Y_RNA.106-201ENST00000363189 100 ntBASIC0.9□□□□□ -2.27
RFX3P48380 Y_RNA.118-201ENST00000363300 101 ntBASIC0.9□□□□□ -2.27
RFX3P48380 RNU4-76P-201ENST00000364509 141 ntBASIC0.9□□□□□ -2.27
RFX3P48380 RNU6-700P-201ENST00000391043 107 ntBASIC0.9□□□□□ -2.27
RFX3P48380 MIR190B-201ENST00000401119 79 ntBASIC0.9□□□□□ -2.27
RFX3P48380 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.9□□□□□ -2.27
RFX3P48380 RAB28P5-201ENST00000427490 651 ntBASIC0.9□□□□□ -2.27
RFX3P48380 EIF1P2-201ENST00000428233 350 ntBASIC0.9□□□□□ -2.27
RFX3P48380 HSPE1P13-201ENST00000451143 297 ntBASIC0.9□□□□□ -2.27
RFX3P48380 RNU7-172P-201ENST00000517125 64 ntBASIC0.9□□□□□ -2.27
RFX3P48380 AC023157.2-201ENST00000540596 141 ntBASIC0.9□□□□□ -2.27
RFX3P48380 AC018638.8-201ENST00000588755 281 ntBASIC0.9□□□□□ -2.27
RFX3P48380 AC018462.2-201ENST00000605375 395 ntBASIC0.9□□□□□ -2.27
RFX3P48380 MIR6079-201ENST00000635807 62 ntBASIC0.9□□□□□ -2.27
RFX3P48380 MTND5P16-201ENST00000460269 1703 ntBASIC0.89□□□□□ -2.27
RFX3P48380 RNU6-1059P-201ENST00000363752 98 ntBASIC0.89□□□□□ -2.27
RFX3P48380 Y_RNA.364-201ENST00000365532 101 ntBASIC0.89□□□□□ -2.27
RFX3P48380 RNU6-505P-201ENST00000384427 107 ntBASIC0.89□□□□□ -2.27
RFX3P48380 MIR329-1-201ENST00000385028 80 ntBASIC0.89□□□□□ -2.27
RFX3P48380 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.89□□□□□ -2.27
RFX3P48380 MTCYBP10-201ENST00000424905 650 ntBASIC0.89□□□□□ -2.27
RFX3P48380 MTND1P34-201ENST00000438556 671 ntBASIC0.89□□□□□ -2.27
RFX3P48380 UQCRBP2-201ENST00000447827 297 ntBASIC0.89□□□□□ -2.27
RFX3P48380 RNU6-329P-201ENST00000459618 107 ntBASIC0.89□□□□□ -2.27
RFX3P48380 AC048334.1-201ENST00000477975 159 ntBASIC0.89□□□□□ -2.27
RFX3P48380 MTND5P5-201ENST00000503764 376 ntBASIC0.89□□□□□ -2.27
RFX3P48380 UBL5P1-201ENST00000507979 193 ntBASIC0.89□□□□□ -2.27
RFX3P48380 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.89□□□□□ -2.27
RFX3P48380 SNORA31.2-201ENST00000516019 134 ntBASIC0.89□□□□□ -2.27
RFX3P48380 RNU4-49P-201ENST00000516080 140 ntBASIC0.89□□□□□ -2.27
RFX3P48380 RNU6-113P-201ENST00000516653 101 ntBASIC0.89□□□□□ -2.27
RFX3P48380 RN7SKP49-201ENST00000516675 260 ntBASIC0.89□□□□□ -2.27
RFX3P48380 RNU6-1016P-201ENST00000516689 94 ntBASIC0.89□□□□□ -2.27
RFX3P48380 RNU6-922P-201ENST00000516753 99 ntBASIC0.89□□□□□ -2.27
RFX3P48380 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.89□□□□□ -2.27
RFX3P48380 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.89□□□□□ -2.27
RFX3P48380 GHRLOS.1-201ENST00000610995 70 ntBASIC0.89□□□□□ -2.27
RFX3P48380 AC090517.2-201ENST00000614966 680 ntBASIC0.89□□□□□ -2.27
RFX3P48380 AC012676.2-201ENST00000619258 186 ntBASIC0.89□□□□□ -2.27
RFX3P48380 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.89□□□□□ -2.27
RFX3P48380 AL391516.1-201ENST00000554380 2449 ntBASIC0.89□□□□□ -2.27
RFX3P48380 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
RFX3P48380 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
RFX3P48380 MIR410-201ENST00000362222 80 ntBASIC0.88□□□□□ -2.27
RFX3P48380 RNU6-222P-201ENST00000362438 107 ntBASIC0.88□□□□□ -2.27
RFX3P48380 RNU6-199P-201ENST00000362954 107 ntBASIC0.88□□□□□ -2.27
RFX3P48380 SNORA20B-201ENST00000384220 132 ntBASIC0.88□□□□□ -2.27
RFX3P48380 RNU6-1145P-201ENST00000384246 107 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms