Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MIR1323-201ENST00000408090 73 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 MIR1253-201ENST00000408273 105 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 MIR1267-201ENST00000408723 78 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 RNA5SP504-201ENST00000410676 117 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 MTND4P28-201ENST00000426217 387 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 FTH1P12-201ENST00000432137 551 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 snoU13.9-201ENST00000458927 103 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 RNA5SP481-201ENST00000516814 122 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 RNU1-92P-201ENST00000517017 135 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.52□□□□□ -2.17
TNFRSF4P43489 MIR4285-201ENST00000581001 85 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 AL050343.2-201ENST00000607338 280 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 snoZ196.1-201ENST00000625269 89 ntBASIC1.52□□□□□ -2.17
TNFRSF4P43489 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
TNFRSF4P43489 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
TNFRSF4P43489 MIR369-201ENST00000362155 70 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 Y_RNA.813-201ENST00000364639 102 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 RNU4-42P-201ENST00000364738 142 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 Y_RNA.535-201ENST00000384612 99 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 MIR515-2-201ENST00000384883 83 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 MIR515-1-201ENST00000384884 83 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 MIR329-1-201ENST00000385028 80 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 RNU6-360P-201ENST00000390944 104 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 AC008134.1-201ENST00000420943 193 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 HMGN2P34-201ENST00000437647 269 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 RNU6-976P-201ENST00000516086 111 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 RNA5SP437-201ENST00000517249 129 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.51□□□□□ -2.17
TNFRSF4P43489 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.51□□□□□ -2.17
TNFRSF4P43489 MIR4421-201ENST00000578133 69 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 AL080274.1-201ENST00000605565 220 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.51□□□□□ -2.17
TNFRSF4P43489 U2.1-201ENST00000618978 145 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 AC090971.5-201ENST00000621102 293 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 AL160413.1-201ENST00000622780 310 ntBASIC1.51□□□□□ -2.17
TNFRSF4P43489 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
TNFRSF4P43489 MIR126-201ENST00000362291 85 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 RNU6-1301P-201ENST00000362724 104 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 U3.8-201ENST00000363675 217 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 SNORA63D-201ENST00000364359 132 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 RNU6-392P-201ENST00000364926 101 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 RNU6-926P-201ENST00000384075 107 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 MIR548B-201ENST00000385247 97 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
TNFRSF4P43489 AL354695.1-201ENST00000427935 228 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.5□□□□□ -2.17
TNFRSF4P43489 RN7SKP49-201ENST00000516675 260 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 MIR2355-201ENST00000517199 87 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 AC006600.1-201ENST00000572529 153 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.5□□□□□ -2.17
TNFRSF4P43489 AC092447.9-201ENST00000603395 144 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.5□□□□□ -2.17
TNFRSF4P43489 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
TNFRSF4P43489 AP000648.3-201ENST00000623539 4507 ntBASIC1.5□□□□□ -2.17
TNFRSF4P43489 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
TNFRSF4P43489 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
TNFRSF4P43489 Y_RNA.39-201ENST00000362620 98 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 Y_RNA.197-201ENST00000364004 102 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 RNU6-338P-201ENST00000383888 105 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 Y_RNA.445-201ENST00000384168 102 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 RNU6-318P-201ENST00000384283 103 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 Y_RNA.496-201ENST00000384444 101 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 MIR1304-201ENST00000408243 91 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 SNORD12B-201ENST00000410433 91 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.49□□□□□ -2.17
TNFRSF4P43489 AC005908.1-201ENST00000468701 347 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 RPL26P26-201ENST00000480251 434 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.49□□□□□ -2.17
TNFRSF4P43489 AC012493.3-201ENST00000604494 112 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 AC006157.1-201ENST00000611750 366 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 AL357075.2-201ENST00000614906 189 ntBASIC1.49□□□□□ -2.17
TNFRSF4P43489 Y_RNA.5-201ENST00000362334 102 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 U8.1-201ENST00000362843 134 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 Y_RNA.252-201ENST00000364556 101 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 RNU6-1145P-201ENST00000384246 107 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 RNU6-417P-201ENST00000384712 107 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 JTBP1-201ENST00000441314 247 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 PCNPP5-201ENST00000452246 481 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 RNU6-625P-201ENST00000459412 107 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 RNU6-221P-201ENST00000459541 99 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 SNORA40.9-201ENST00000515895 93 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 CYCSP23-201ENST00000519781 313 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 AK6P2-201ENST00000549020 471 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 VN1R91P-201ENST00000594377 169 ntBASIC1.48□□□□□ -2.17
TNFRSF4P43489 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
TNFRSF4P43489 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
TNFRSF4P43489 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.47□□□□□ -2.17
TNFRSF4P43489 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
TNFRSF4P43489 RNU6-1266P-201ENST00000362794 105 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 Y_RNA.498-201ENST00000384460 102 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 RNU6-308P-201ENST00000390957 107 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 RNA5SP323-201ENST00000391094 133 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 RPS20P15-201ENST00000412792 311 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 CHEK2P4-201ENST00000450340 246 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 HSPE1P24-201ENST00000450782 238 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 NDUFB4P10-201ENST00000452541 359 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 AC023790.1-201ENST00000482174 347 ntBASIC1.47□□□□□ -2.17
TNFRSF4P43489 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms