Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
HOXD3P31249 MIR411-201ENST00000362239 96 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 SNORA27.1-201ENST00000362604 124 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 RNU6-1272P-201ENST00000362776 107 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 Y_RNA.310-201ENST00000365063 113 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 Y_RNA.341-201ENST00000365341 102 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 RNU6-47P-201ENST00000383866 107 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 SNORD116-13-201ENST00000384408 92 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 AC009238.1-201ENST00000442165 424 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 AC009237.6-201ENST00000446969 424 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 YWHAEP4-201ENST00000505390 198 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 AC096725.1-201ENST00000514266 313 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 RNU6-1337P-201ENST00000516525 95 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 RNU6-63P-201ENST00000516690 95 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 SNORA81.3-201ENST00000517283 198 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 AC022559.1-201ENST00000520905 205 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 AC136628.3-201ENST00000521868 290 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 AC004792.1-201ENST00000614523 137 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 FO624990.1-201ENST00000636373 85 ntBASIC2.05□□□□□ -2.08
HOXD3P31249 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.05□□□□□ -2.08
HOXD3P31249 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
HOXD3P31249 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXD3P31249 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
HOXD3P31249 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
HOXD3P31249 RNA5SP432-201ENST00000362480 116 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 RNU6-923P-201ENST00000364753 107 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 Y_RNA.308-201ENST00000365043 101 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 RNU6-1240P-201ENST00000365155 104 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 RNU1-138P-201ENST00000384093 164 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 MTCO2P33-201ENST00000402100 465 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXD3P31249 RPL23AP7-203ENST00000449021 469 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 Y_RNA.644-201ENST00000459006 113 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 AC010598.1-201ENST00000510378 103 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 HMGB3P3-201ENST00000510526 400 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.04□□□□□ -2.08
HOXD3P31249 AC107393.1-201ENST00000512403 346 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 RNA5SP20-201ENST00000515976 84 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 Y_RNA.674-201ENST00000516362 113 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 SNORA31.15-201ENST00000516771 132 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 AC073349.3-201ENST00000617616 186 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 AL365265.1-201ENST00000621045 234 ntBASIC2.04□□□□□ -2.08
HOXD3P31249 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
HOXD3P31249 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.04□□□□□ -2.08
HOXD3P31249 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
HOXD3P31249 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
HOXD3P31249 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
HOXD3P31249 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
HOXD3P31249 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.03□□□□□ -2.08
HOXD3P31249 AL355596.1-201ENST00000565399 3996 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 AL356292.1-201ENST00000283110 373 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 RNU4-10P-201ENST00000364383 140 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 Y_RNA.368-201ENST00000365547 113 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 Y_RNA.785-201ENST00000384290 109 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 RNU6-136P-201ENST00000384663 107 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 MIR524-201ENST00000385242 87 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 RNU6-1248P-201ENST00000391096 64 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 MIR873-201ENST00000401120 77 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 SNORD88.1-201ENST00000408684 91 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.03□□□□□ -2.08
HOXD3P31249 PIGPP3-201ENST00000425307 415 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 RPS27AP9-201ENST00000477681 438 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 NDUFA5P6-201ENST00000542110 379 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXD3P31249 U2.15-201ENST00000611544 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.16-201ENST00000613119 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.12-201ENST00000613778 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.20-201ENST00000613956 192 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.9-201ENST00000615427 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.11-201ENST00000616345 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.2-201ENST00000616535 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.3-201ENST00000617785 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.19-201ENST00000618602 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 RNU2-1-201ENST00000618664 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 AL590808.1-201ENST00000618696 141 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.6-201ENST00000619225 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.5-201ENST00000619465 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 U2.10-201ENST00000620268 191 ntBASIC2.03□□□□□ -2.08
HOXD3P31249 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.02□□□□□ -2.09
HOXD3P31249 Y_RNA.29-201ENST00000362570 113 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 Y_RNA.150-201ENST00000363562 102 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 SNORA72.4-201ENST00000384174 132 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 SNORA70B-201ENST00000384210 135 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 MIR181B1-201ENST00000385240 110 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 RNU6-493P-201ENST00000391321 108 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 RNU6-710P-201ENST00000410424 105 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 AC009310.1-201ENST00000414414 451 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD3P31249 AL357134.1-201ENST00000445848 426 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 RPS20P10-201ENST00000451209 253 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 RPS27P22-201ENST00000478056 241 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 AC010409.1-201ENST00000487382 476 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 AC087441.2-201ENST00000529141 262 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 CBX3P4-201ENST00000538909 354 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 AC009127.3-201ENST00000570531 403 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 SNORD53-201ENST00000579969 78 ntBASIC2.02□□□□□ -2.09
HOXD3P31249 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD3P31249 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms