Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 Z98742.3-201ENST00000418637 326 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 POLR2KP2-201ENST00000438155 177 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 RPL39P38-201ENST00000467018 153 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 SERF1AP1-201ENST00000514575 187 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 RNU2-31P-201ENST00000516954 155 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 MIR1273D-201ENST00000577266 86 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 MIR3145-201ENST00000580727 82 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 AC006380.1-201ENST00000603598 186 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 AC022202.1-201ENST00000613515 211 ntBASIC2.59□□□□□ -1.99
SMARCA1P28370 Y_RNA.136-201ENST00000363444 102 ntBASIC2.58□□□□□ -2
SMARCA1P28370 Y_RNA.329-201ENST00000365209 107 ntBASIC2.58□□□□□ -2
SMARCA1P28370 RNU6-1235P-201ENST00000384559 107 ntBASIC2.58□□□□□ -2
SMARCA1P28370 AC016909.1-201ENST00000415916 166 ntBASIC2.58□□□□□ -2
SMARCA1P28370 AC074290.1-201ENST00000448883 135 ntBASIC2.58□□□□□ -2
SMARCA1P28370 MTND4LP30-201ENST00000454092 297 ntBASIC2.58□□□□□ -2
SMARCA1P28370 RNU6-498P-201ENST00000459468 107 ntBASIC2.58□□□□□ -2
SMARCA1P28370 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.58□□□□□ -2
SMARCA1P28370 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.58□□□□□ -2
SMARCA1P28370 MIR5694-201ENST00000581190 76 ntBASIC2.58□□□□□ -2
SMARCA1P28370 DEFB117-201ENST00000602356 141 ntBASIC2.58□□□□□ -2
SMARCA1P28370 AC005828.6-201ENST00000606610 232 ntBASIC2.58□□□□□ -2
SMARCA1P28370 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SMARCA1P28370 MIR221-201ENST00000385135 110 ntBASIC2.57□□□□□ -2
SMARCA1P28370 SNORA53-201ENST00000391141 249 ntBASIC2.57□□□□□ -2
SMARCA1P28370 RNA5SP270-201ENST00000411361 118 ntBASIC2.57□□□□□ -2
SMARCA1P28370 SRIP3-201ENST00000413200 219 ntBASIC2.57□□□□□ -2
SMARCA1P28370 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.57□□□□□ -2
SMARCA1P28370 MTCO1P5-201ENST00000433573 344 ntBASIC2.57□□□□□ -2
SMARCA1P28370 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.57□□□□□ -2
SMARCA1P28370 RNU1-41P-201ENST00000516161 162 ntBASIC2.57□□□□□ -2
SMARCA1P28370 Y_RNA.673-201ENST00000516306 88 ntBASIC2.57□□□□□ -2
SMARCA1P28370 RNU1-48P-201ENST00000516400 162 ntBASIC2.57□□□□□ -2
SMARCA1P28370 AC025647.1-201ENST00000517879 253 ntBASIC2.57□□□□□ -2
SMARCA1P28370 AC087441.2-201ENST00000529141 262 ntBASIC2.57□□□□□ -2
SMARCA1P28370 RPL21P9-201ENST00000556149 474 ntBASIC2.57□□□□□ -2
SMARCA1P28370 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.57□□□□□ -2
SMARCA1P28370 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.57□□□□□ -2
SMARCA1P28370 AL137847.3-201ENST00000611521 109 ntBASIC2.57□□□□□ -2
SMARCA1P28370 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.56□□□□□ -2
SMARCA1P28370 Y_RNA.60-201ENST00000362831 98 ntBASIC2.56□□□□□ -2
SMARCA1P28370 RNU6-379P-201ENST00000363813 104 ntBASIC2.56□□□□□ -2
SMARCA1P28370 SNORD114-6-201ENST00000364393 72 ntBASIC2.56□□□□□ -2
SMARCA1P28370 RNU1-51P-201ENST00000365345 176 ntBASIC2.56□□□□□ -2
SMARCA1P28370 AL031003.1-201ENST00000404229 172 ntBASIC2.56□□□□□ -2
SMARCA1P28370 AL355796.1-201ENST00000406706 323 ntBASIC2.56□□□□□ -2
SMARCA1P28370 AL603910.2-201ENST00000407268 136 ntBASIC2.56□□□□□ -2
SMARCA1P28370 RN7SKP223-201ENST00000410582 62 ntBASIC2.56□□□□□ -2
SMARCA1P28370 YWHAEP4-201ENST00000505390 198 ntBASIC2.56□□□□□ -2
SMARCA1P28370 RNU2-34P-201ENST00000516534 121 ntBASIC2.56□□□□□ -2
SMARCA1P28370 RNU4-80P-201ENST00000363200 141 ntBASIC2.55□□□□□ -2
SMARCA1P28370 RNU6-324P-201ENST00000363957 106 ntBASIC2.55□□□□□ -2
SMARCA1P28370 Y_RNA.361-201ENST00000365515 120 ntBASIC2.55□□□□□ -2
SMARCA1P28370 Y_RNA.416-201ENST00000384014 113 ntBASIC2.55□□□□□ -2
SMARCA1P28370 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.55□□□□□ -2
SMARCA1P28370 AL357134.1-201ENST00000445848 426 ntBASIC2.55□□□□□ -2
SMARCA1P28370 AC245102.2-201ENST00000448956 180 ntBASIC2.55□□□□□ -2
SMARCA1P28370 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.55□□□□□ -2
SMARCA1P28370 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.55□□□□□ -2
SMARCA1P28370 SNORD65B-201ENST00000459126 73 ntBASIC2.55□□□□□ -2
SMARCA1P28370 SCARNA16.3-201ENST00000516595 184 ntBASIC2.55□□□□□ -2
SMARCA1P28370 AL031274.2-201ENST00000599419 203 ntBASIC2.55□□□□□ -2
SMARCA1P28370 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.54□□□□□ -2
SMARCA1P28370 Y_RNA.352-201ENST00000365439 102 ntBASIC2.54□□□□□ -2
SMARCA1P28370 SNORA20B-201ENST00000384220 132 ntBASIC2.54□□□□□ -2
SMARCA1P28370 Y_RNA.476-201ENST00000384347 108 ntBASIC2.54□□□□□ -2
SMARCA1P28370 SNORA40.19-201ENST00000390846 128 ntBASIC2.54□□□□□ -2
SMARCA1P28370 UBL5P3-201ENST00000475112 231 ntBASIC2.54□□□□□ -2
SMARCA1P28370 AC091959.1-201ENST00000495857 238 ntBASIC2.54□□□□□ -2
SMARCA1P28370 RNU6-191P-201ENST00000516295 94 ntBASIC2.54□□□□□ -2
SMARCA1P28370 MIR4643-201ENST00000577473 78 ntBASIC2.54□□□□□ -2
SMARCA1P28370 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.54□□□□□ -2
SMARCA1P28370 MIR6132-201ENST00000622083 109 ntBASIC2.54□□□□□ -2
SMARCA1P28370 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
SMARCA1P28370 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SMARCA1P28370 AC009487.4-201ENST00000624969 3585 ntBASIC2.53□□□□□ -2
SMARCA1P28370 RNU6-1266P-201ENST00000362794 105 ntBASIC2.53□□□□□ -2
SMARCA1P28370 Y_RNA.277-201ENST00000364754 102 ntBASIC2.53□□□□□ -2
SMARCA1P28370 Y_RNA.539-201ENST00000384635 107 ntBASIC2.53□□□□□ -2
SMARCA1P28370 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.53□□□□□ -2
SMARCA1P28370 AC060773.1-201ENST00000421698 310 ntBASIC2.53□□□□□ -2
SMARCA1P28370 RNU6-1023P-201ENST00000516137 106 ntBASIC2.53□□□□□ -2
SMARCA1P28370 RNU7-193P-201ENST00000516723 65 ntBASIC2.53□□□□□ -2
SMARCA1P28370 RNU6-856P-201ENST00000516959 98 ntBASIC2.53□□□□□ -2
SMARCA1P28370 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.53□□□□□ -2
SMARCA1P28370 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.53□□□□□ -2
SMARCA1P28370 U2.14-201ENST00000615943 113 ntBASIC2.53□□□□□ -2
SMARCA1P28370 AC012640.5-201ENST00000623897 319 ntBASIC2.53□□□□□ -2
SMARCA1P28370 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
SMARCA1P28370 SNORA25.1-201ENST00000362326 128 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 Y_RNA.20-201ENST00000362479 113 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 Y_RNA.99-201ENST00000363138 105 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 U8.2-201ENST00000363156 134 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 Y_RNA.124-201ENST00000363339 93 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 SNORD27-201ENST00000363981 72 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 Y_RNA.478-201ENST00000384358 107 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 Y_RNA.489-201ENST00000384410 101 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 AL355497.1-201ENST00000406262 551 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 MIR548H3-201ENST00000408771 118 ntBASIC2.52□□□□□ -2.01
SMARCA1P28370 AL121890.1-201ENST00000435457 205 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 157.1 ms