Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 Y_RNA.95-201ENST00000363079 95 ntBASIC3.38□□□□□ -1.87
COL8A1P27658 SNORA38.1-201ENST00000364172 131 ntBASIC3.38□□□□□ -1.87
COL8A1P27658 SNORD31B-201ENST00000364977 69 ntBASIC3.38□□□□□ -1.87
COL8A1P27658 Y_RNA.621-201ENST00000411065 96 ntBASIC3.38□□□□□ -1.87
COL8A1P27658 RPS12P18-201ENST00000442381 270 ntBASIC3.38□□□□□ -1.87
COL8A1P27658 AC091304.10-201ENST00000641554 121 ntBASIC3.38□□□□□ -1.87
COL8A1P27658 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
COL8A1P27658 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
COL8A1P27658 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
COL8A1P27658 Y_RNA.94-201ENST00000363068 106 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 RNU1-96P-201ENST00000364163 162 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 Y_RNA.253-201ENST00000364562 112 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 Y_RNA.565-201ENST00000384719 101 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
COL8A1P27658 MIR1251-201ENST00000408552 70 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 AC099677.2-201ENST00000436385 175 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.37□□□□□ -1.87
COL8A1P27658 AC112771.1-201ENST00000463581 102 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 AC025518.1-201ENST00000479856 347 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 RNU7-143P-201ENST00000516781 65 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 RNA5SP468-201ENST00000516782 93 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 AC073413.2-201ENST00000604332 360 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 AC006386.2-201ENST00000624491 75 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 AC012005.1-201ENST00000624575 75 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 MIR203B-201ENST00000636080 86 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 MIR1255B1-201ENST00000636325 63 ntBASIC3.37□□□□□ -1.87
COL8A1P27658 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.37□□□□□ -1.87
COL8A1P27658 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL8A1P27658 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL8A1P27658 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL8A1P27658 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.36□□□□□ -1.87
COL8A1P27658 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL8A1P27658 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL8A1P27658 RNU6-50P-201ENST00000362356 103 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 RNU4-67P-201ENST00000364569 141 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 RNY1P4-201ENST00000384595 115 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 MIR1294-201ENST00000408503 142 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 MIR1183-201ENST00000408856 89 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC3.36□□□□□ -1.87
COL8A1P27658 SNRPGP5-201ENST00000456003 220 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 AC010401.1-201ENST00000463867 348 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 Y_RNA.659-201ENST00000515994 113 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 MIR449C-201ENST00000516047 92 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 AC079598.5-201ENST00000547460 117 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 EIF4BP1-201ENST00000554881 351 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 MIR4778-201ENST00000577635 80 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 MIR548BB-201ENST00000626714 66 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
COL8A1P27658 AC006504.1-201ENST00000562493 3666 ntBASIC3.36□□□□□ -1.87
COL8A1P27658 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL8A1P27658 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL8A1P27658 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL8A1P27658 FAM35DP-201ENST00000323387 2712 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
COL8A1P27658 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL8A1P27658 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL8A1P27658 LINC02471-203ENST00000641941 4752 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 AC010889.1-201ENST00000566193 2666 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 SNORD116-10-201ENST00000363791 102 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 Y_RNA.316-201ENST00000365118 111 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 Y_RNA.377-201ENST00000365644 108 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL8A1P27658 RNU6-301P-201ENST00000384277 107 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 MIR605-201ENST00000385078 83 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC3.35□□□□□ -1.87
COL8A1P27658 RNU2-34P-201ENST00000516534 121 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 MIR5187-201ENST00000583479 76 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 AL137849.1-201ENST00000604767 169 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 AC013412.1-201ENST00000610687 192 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 MIR4727-201ENST00000622232 55 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL8A1P27658 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.35□□□□□ -1.87
COL8A1P27658 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.35□□□□□ -1.87
COL8A1P27658 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL8A1P27658 AC017071.1-201ENST00000564407 2204 ntBASIC3.35□□□□□ -1.87
COL8A1P27658 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL8A1P27658 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.34□□□□□ -1.87
COL8A1P27658 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL8A1P27658 RNU6-509P-201ENST00000363519 107 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 RNU6-590P-201ENST00000365039 107 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 RNU6-234P-201ENST00000365229 104 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 MIR548O-201ENST00000408583 114 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 AC017083.1-201ENST00000428093 483 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 AC005326.1-201ENST00000429197 123 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.34□□□□□ -1.87
COL8A1P27658 SCGB1D5P-201ENST00000515134 247 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 Y_RNA.714-201ENST00000517065 90 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.34□□□□□ -1.87
COL8A1P27658 MIR3609-201ENST00000582661 80 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 AC022217.4-201ENST00000604389 163 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 Y_RNA.773-201ENST00000607168 90 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 U4atac.1-201ENST00000618345 95 ntBASIC3.34□□□□□ -1.87
COL8A1P27658 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL8A1P27658 ZNF271P-202ENST00000465539 1970 ntBASIC3.34□□□□□ -1.88
COL8A1P27658 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.34□□□□□ -1.88
COL8A1P27658 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL8A1P27658 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.34□□□□□ -1.88
COL8A1P27658 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL8A1P27658 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms