Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU6-968P-201ENST00000384076 107 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 Y_RNA.490-201ENST00000384413 102 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 MIR548K-201ENST00000408406 116 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 MIR1912-201ENST00000410389 80 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 AC004866.1-201ENST00000411748 78 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 CST2P1-201ENST00000425770 87 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 MTCO3P29-201ENST00000432119 779 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.8□□□□□ -2.28
COL5A3P25940 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.8□□□□□ -2.28
COL5A3P25940 DAP3P1-201ENST00000441522 278 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 PCNPP5-201ENST00000452246 481 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.8□□□□□ -2.28
COL5A3P25940 RNU7-57P-201ENST00000459540 60 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.8□□□□□ -2.28
COL5A3P25940 RNU6-496P-201ENST00000516145 99 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 SNORA31.17-201ENST00000516953 127 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.8□□□□□ -2.28
COL5A3P25940 MIR3169-201ENST00000578032 83 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 MIR5690-201ENST00000583739 73 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 RBM11P1-201ENST00000604951 799 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 AC113139.1-201ENST00000605049 239 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 AC104260.1-201ENST00000616660 539 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 TPTEP1-208ENST00000636884 213 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 MTND5P16-201ENST00000460269 1703 ntBASIC0.8□□□□□ -2.28
COL5A3P25940 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
COL5A3P25940 HSBP1P2-201ENST00000299671 229 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNA5SP347-201ENST00000362445 119 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNY1P16-201ENST00000363063 111 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNU6-873P-201ENST00000363833 107 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 Y_RNA.179-201ENST00000363844 90 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNU6-593P-201ENST00000364716 112 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 Y_RNA.279-201ENST00000364763 95 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 Y_RNA.482-201ENST00000384377 111 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNU6-601P-201ENST00000384540 107 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNU6-306P-201ENST00000384617 107 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNU6-700P-201ENST00000391043 107 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNA5SP467-201ENST00000391274 118 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 MTCYBP10-201ENST00000424905 650 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
COL5A3P25940 MTND3P23-201ENST00000431980 347 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 AC098614.3-201ENST00000438957 440 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 AC004386.2-201ENST00000441858 148 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.79□□□□□ -2.28
COL5A3P25940 AC016717.1-201ENST00000448918 286 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.79□□□□□ -2.28
COL5A3P25940 RPL7P42-201ENST00000481005 679 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNU6-1146P-201ENST00000516282 102 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 RNU6-229P-201ENST00000516614 102 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.79□□□□□ -2.28
COL5A3P25940 MIR6759-201ENST00000638110 65 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
COL5A3P25940 ZNF299P-201ENST00000406845 1804 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 SNORA72.1-201ENST00000363485 129 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 Y_RNA.146-201ENST00000363549 102 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 RNU6-1188P-201ENST00000363795 107 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.78□□□□□ -2.28
COL5A3P25940 Y_RNA.405-201ENST00000383979 100 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 RNU6-767P-201ENST00000384132 107 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 Y_RNA.451-201ENST00000384200 100 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 RNU6-975P-201ENST00000384296 105 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 Y_RNA.524-201ENST00000384564 100 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 Y_RNA.561-201ENST00000384694 100 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 RNU6-417P-201ENST00000384712 107 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 MIR153-2-201ENST00000385225 87 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
COL5A3P25940 MIR300-201ENST00000401138 83 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 Y_RNA.594-201ENST00000410373 140 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 AC016925.1-201ENST00000458303 298 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.78□□□□□ -2.28
COL5A3P25940 PRDX4P1-201ENST00000507189 574 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 RNU6-344P-201ENST00000516635 111 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 AL121579.1-201ENST00000555129 305 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.78□□□□□ -2.28
COL5A3P25940 MIR4422-201ENST00000581938 83 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 AL355073.2-201ENST00000612106 557 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 SCARNA4-201ENST00000629045 128 ntBASIC0.78□□□□□ -2.28
COL5A3P25940 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.78□□□□□ -2.28
COL5A3P25940 RNU6-727P-201ENST00000363592 107 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 RNU6-414P-201ENST00000363705 104 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 SNORD115-32-201ENST00000364079 82 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.29
COL5A3P25940 RNU6-1145P-201ENST00000384246 107 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 RNU6-1026P-201ENST00000384465 108 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 MIR10B-201ENST00000385011 110 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 MIR548F5-201ENST00000408421 86 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 MIR1185-2-201ENST00000408687 86 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 RNA5SP100-201ENST00000410903 110 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 RNA5SP59-201ENST00000410922 110 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 RPS26P42-201ENST00000413485 326 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 PDCL2P1-201ENST00000419302 352 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 MTND5P15-201ENST00000434246 349 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 MTCO1P44-201ENST00000441935 243 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.78□□□□□ -2.29
COL5A3P25940 AC010531.2-201ENST00000465012 153 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 MTND5P5-201ENST00000503764 376 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 AC079140.2-201ENST00000506193 142 ntBASIC0.78□□□□□ -2.29
COL5A3P25940 RNU6-875P-201ENST00000516488 106 ntBASIC0.78□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms