Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC092991.1-201ENST00000477176 376 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 RNU6-1291P-201ENST00000516591 104 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 MIR4255-201ENST00000579351 72 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 AC127459.3-201ENST00000624328 466 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 RNA5SP327-201ENST00000362494 101 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 RNU4-76P-201ENST00000364509 141 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 RNU6-1310P-201ENST00000384153 107 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 MIR660-201ENST00000385235 97 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 SNORA75.6-201ENST00000391318 127 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 MTND4P28-201ENST00000426217 387 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.03□□□□□ -2.08
HMGB1P09429 AC098614.3-201ENST00000438957 440 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 AC233266.1-201ENST00000454518 96 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 RNU6-559P-201ENST00000516151 98 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 AC242852.1-201ENST00000612151 96 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 AC244015.1-201ENST00000622301 99 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 AC084768.2-201ENST00000622736 221 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 AC068647.2-201ENST00000637380 353 ntBASIC2.03□□□□□ -2.08
HMGB1P09429 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.02□□□□□ -2.09
HMGB1P09429 MIR410-201ENST00000362222 80 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 SNORA25.8-201ENST00000364831 128 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 RNU6-890P-201ENST00000384121 107 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 MIR562-201ENST00000384894 95 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 MIR873-201ENST00000401120 77 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 snoU13.15-201ENST00000459407 104 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 RPL39P38-201ENST00000467018 153 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 AC105758.1-201ENST00000506038 399 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 RNU6-922P-201ENST00000516753 99 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 RAB11AP2-201ENST00000545905 639 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 AC080078.3-201ENST00000605407 463 ntBASIC2.02□□□□□ -2.09
HMGB1P09429 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
HMGB1P09429 Y_RNA.124-201ENST00000363339 93 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 Y_RNA.605-201ENST00000410577 105 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.01□□□□□ -2.09
HMGB1P09429 CALM2P4-201ENST00000430810 426 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.01□□□□□ -2.09
HMGB1P09429 AL137792.2-201ENST00000443484 235 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.01□□□□□ -2.09
HMGB1P09429 RNA5SP168-201ENST00000516642 112 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 RNU6-250P-201ENST00000516958 103 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 RNU6-341P-201ENST00000516973 96 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 AC023442.1-201ENST00000531247 422 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.01□□□□□ -2.09
HMGB1P09429 AC087588.2-201ENST00000617667 426 ntBASIC2.01□□□□□ -2.09
HMGB1P09429 RNU6-505P-201ENST00000384427 107 ntBASIC2□□□□□ -2.09
HMGB1P09429 Y_RNA.592-201ENST00000410274 109 ntBASIC2□□□□□ -2.09
HMGB1P09429 DYNLT3P2-201ENST00000442517 295 ntBASIC2□□□□□ -2.09
HMGB1P09429 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2□□□□□ -2.09
HMGB1P09429 AC113139.1-201ENST00000605049 239 ntBASIC2□□□□□ -2.09
HMGB1P09429 MIR6845-201ENST00000613182 61 ntBASIC2□□□□□ -2.09
HMGB1P09429 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2□□□□□ -2.09
HMGB1P09429 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
HMGB1P09429 SNORA1B-201ENST00000362535 133 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 SNORA26.9-201ENST00000391322 122 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 OOSP1P1-201ENST00000423265 274 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 AC007677.1-201ENST00000445757 515 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 Y_RNA.653-201ENST00000459091 95 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 RN7SL429P-201ENST00000479090 223 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 RN7SL489P-201ENST00000486185 223 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 RN7SL327P-201ENST00000488659 223 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 PRDX4P1-201ENST00000507189 574 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 RNU6-295P-201ENST00000516901 104 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 RNU7-4P-201ENST00000516961 62 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 AC144568.1-201ENST00000520139 137 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 AP002004.2-201ENST00000531656 154 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 AC004467.1-201ENST00000615678 330 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 RN7SL853P-201ENST00000617250 223 ntBASIC1.99□□□□□ -2.09
HMGB1P09429 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.99□□□□□ -2.09
HMGB1P09429 RNY3P11-201ENST00000364153 102 ntBASIC1.98□□□□□ -2.09
HMGB1P09429 U8.16-201ENST00000391279 133 ntBASIC1.98□□□□□ -2.09
HMGB1P09429 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGB1P09429 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGB1P09429 RNU6-470P-201ENST00000515954 104 ntBASIC1.98□□□□□ -2.09
HMGB1P09429 RNU6-63P-201ENST00000516690 95 ntBASIC1.98□□□□□ -2.09
HMGB1P09429 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.98□□□□□ -2.09
HMGB1P09429 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.98□□□□□ -2.09
HMGB1P09429 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
HMGB1P09429 AC005592.1-201ENST00000566527 1640 ntBASIC1.98□□□□□ -2.09
HMGB1P09429 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.97□□□□□ -2.09
HMGB1P09429 MTCO3P10-201ENST00000455912 772 ntBASIC1.97□□□□□ -2.09
HMGB1P09429 RNU7-28P-201ENST00000516759 62 ntBASIC1.97□□□□□ -2.09
HMGB1P09429 AC091178.2-201ENST00000584401 117 ntBASIC1.97□□□□□ -2.09
HMGB1P09429 MIR502-201ENST00000606349 86 ntBASIC1.97□□□□□ -2.09
HMGB1P09429 AC122108.2-201ENST00000611946 526 ntBASIC1.97□□□□□ -2.09
HMGB1P09429 AC133104.2-201ENST00000615272 193 ntBASIC1.97□□□□□ -2.09
HMGB1P09429 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.97□□□□□ -2.09
HMGB1P09429 RNU6-199P-201ENST00000362954 107 ntBASIC1.96□□□□□ -2.1
HMGB1P09429 Y_RNA.314-201ENST00000365114 102 ntBASIC1.96□□□□□ -2.1
HMGB1P09429 SUMO1P2-201ENST00000452524 304 ntBASIC1.96□□□□□ -2.1
HMGB1P09429 AC093850.1-201ENST00000454121 251 ntBASIC1.96□□□□□ -2.1
HMGB1P09429 RNU7-12P-201ENST00000516030 62 ntBASIC1.96□□□□□ -2.1
HMGB1P09429 RNU7-40P-201ENST00000516397 64 ntBASIC1.96□□□□□ -2.1
HMGB1P09429 AL355073.2-201ENST00000612106 557 ntBASIC1.96□□□□□ -2.1
HMGB1P09429 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
HMGB1P09429 RNU6-961P-201ENST00000363893 105 ntBASIC1.95□□□□□ -2.1
HMGB1P09429 RNU6-457P-201ENST00000363999 107 ntBASIC1.95□□□□□ -2.1
HMGB1P09429 RNU6-424P-201ENST00000384367 105 ntBASIC1.95□□□□□ -2.1
HMGB1P09429 AC138393.2-201ENST00000414742 246 ntBASIC1.95□□□□□ -2.1
HMGB1P09429 AL049830.1-201ENST00000468034 425 ntBASIC1.95□□□□□ -2.1
HMGB1P09429 AL133373.1-201ENST00000497098 94 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms