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Protein–RNA interactions for Protein: O75056
SDC3, Syndecan-3, human
Predictions only
Length
442 aa
.
Download Table
Protein
RNA
Prediction (catRAPID)
Interaction (ENCODE eCLIP)
Gene
UniProt Accession
Transcript Symbol
Ensembl Transcript ID
Length
Transcript Status
Prediction Score
Prediction z-Score
p-Value
Fold Change
SDC3
O75056
AC011604.2-202
ENST00000540229
2451 nt
APPRIS P5
TSL 2
BASIC
1.32
□□□□□ -2.2
SDC3
O75056
BRDT-206
ENST00000402388
3125 nt
APPRIS P3
TSL 1 (best)
BASIC
1.32
□□□□□ -2.2
SDC3
O75056
Y_RNA.191-201
ENST00000363972
113 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
MIR518E-201
ENST00000385252
88 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
RPL21P1-201
ENST00000399532
476 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
ELOCP21-201
ENST00000412558
336 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC138393.2-201
ENST00000414742
246 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
TRAPPC2P8-201
ENST00000440676
396 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC027119.1-201
ENST00000440877
241 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC003988.1-201
ENST00000447198
578 nt
TSL 5
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
RPS29P23-201
ENST00000458635
123 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
RNU7-87P-201
ENST00000459343
62 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC004223.1-201
ENST00000479840
271 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC099513.1-201
ENST00000490423
301 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC097501.2-201
ENST00000502668
305 nt
TSL 5
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
PRDX4P1-201
ENST00000507189
574 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC096721.1-201
ENST00000513540
552 nt
TSL 4
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
RNU4ATAC7P-201
ENST00000516280
125 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC022217.4-201
ENST00000604389
163 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
Z84484.1-202
ENST00000612718
60 nt
TSL 5
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
AC104260.1-201
ENST00000616660
539 nt
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
HIF1A-212
ENST00000557538
3468 nt
TSL 1 (best)
BASIC
1.31
□□□□□ -2.2
SDC3
O75056
ANKRD30BP1-201
ENST00000451052
2186 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
MIR26B-201
ENST00000362251
77 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
RNA5SP109-201
ENST00000391010
116 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
RPL30P13-201
ENST00000418873
348 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
RPS27P16-201
ENST00000425758
201 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
UQCRBP2-201
ENST00000447827
297 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
U8.22-201
ENST00000459141
133 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
RNU7-34P-201
ENST00000459394
64 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
RNU6-107P-201
ENST00000516643
102 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
MIR2355-201
ENST00000517199
87 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
AP000755.2-201
ENST00000526777
571 nt
TSL 5
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
LINC02293-201
ENST00000548335
574 nt
TSL 5
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
AC080078.3-201
ENST00000605407
463 nt
BASIC
1.3
□□□□□ -2.2
SDC3
O75056
RNU6-1188P-201
ENST00000363795
107 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
RNU6-879P-201
ENST00000364328
108 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
Y_RNA.358-201
ENST00000365491
99 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
Y_RNA.474-201
ENST00000384341
102 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
SNORA75.6-201
ENST00000391318
127 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
SDAD1P3-201
ENST00000427380
333 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AC092423.1-201
ENST00000430165
186 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AP001043.2-201
ENST00000434589
288 nt
TSL 3
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AC098614.3-201
ENST00000438957
440 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AL606517.2-201
ENST00000442855
241 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
MRPS10P1-201
ENST00000448483
130 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
PCNPP5-201
ENST00000452246
481 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
MTND4P17-201
ENST00000470444
350 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AC093893.1-201
ENST00000505781
510 nt
TSL 5
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AC096558.1-203
ENST00000550516
574 nt
TSL 3
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
MIR4452-201
ENST00000583004
71 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AL357075.2-201
ENST00000614906
189 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AL078604.3-201
ENST00000615580
211 nt
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
AC025539.1-201
ENST00000515343
4019 nt
TSL 2
BASIC
1.29
□□□□□ -2.2
SDC3
O75056
LINC00643-201
ENST00000334389
3247 nt
TSL 2
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
RNA5SP361-201
ENST00000362686
118 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
RNU6-1283P-201
ENST00000365314
105 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
SNORD114-22-201
ENST00000365423
72 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
RNU6-318P-201
ENST00000384283
103 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
RNU6-1065P-201
ENST00000384513
106 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
Y_RNA.577-201
ENST00000384794
101 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
MIR489-201
ENST00000384923
84 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
MTCYBP4-201
ENST00000401524
249 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
RNU6-1186P-201
ENST00000410429
97 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
RNU6-370P-201
ENST00000411008
104 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
RPL23AP50-201
ENST00000434149
455 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AC005002.2-201
ENST00000438228
269 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AC012445.1-201
ENST00000442831
607 nt
TSL 3
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
RNU7-94P-201
ENST00000459576
63 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
LINC01323-201
ENST00000486767
576 nt
TSL 3
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AC008243.1-201
ENST00000504955
389 nt
TSL 3
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
SNORA31.10-201
ENST00000516482
106 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
CR383656.11-201
ENST00000552261
498 nt
TSL 3
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AL442163.3-201
ENST00000554110
156 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AC008269.2-201
ENST00000561915
1105 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AC090398.1-202
ENST00000580403
457 nt
TSL 2
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
MIR5690-201
ENST00000583739
73 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
MIR4438-201
ENST00000585271
93 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AL390123.1-201
ENST00000603216
237 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AL355073.2-201
ENST00000612106
557 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
AC025253.1-201
ENST00000613623
543 nt
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
TTK-211
ENST00000627129
240 nt
TSL 5
BASIC
1.28
□□□□□ -2.2
SDC3
O75056
JMJD1C-212
ENST00000639129
7901 nt
APPRIS ALT2
TSL 5
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
RNU6-1123P-201
ENST00000362347
106 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
SNORD114-27-201
ENST00000363766
70 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
SNORD26-201
ENST00000384147
75 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
RNU6-1031P-201
ENST00000384773
107 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
SNORA40.6-201
ENST00000391153
128 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
MRPL42P3-201
ENST00000401492
326 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
Y_RNA.646-201
ENST00000410980
101 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
AL591504.1-201
ENST00000450681
414 nt
TSL 3
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
RNA5SP61-201
ENST00000516453
100 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
RNU6-1213P-201
ENST00000517075
94 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
AC022868.1-201
ENST00000517767
391 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
AC018448.1-201
ENST00000552843
316 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
AL929325.1-201
ENST00000603096
117 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
AC113139.1-201
ENST00000605049
239 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
MIR8054-201
ENST00000620877
86 nt
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
ZGRF1-208
ENST00000505019
6652 nt
APPRIS P1
TSL 5
BASIC
1.27
□□□□□ -2.21
SDC3
O75056
MCMDC2-207
ENST00000492775
1831 nt
TSL 1 (best)
BASIC
1.26
□□□□□ -2.21
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Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms