Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.32□□□□□ -2.2
SDC3O75056 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.32□□□□□ -2.2
SDC3O75056 Y_RNA.191-201ENST00000363972 113 ntBASIC1.31□□□□□ -2.2
SDC3O75056 MIR518E-201ENST00000385252 88 ntBASIC1.31□□□□□ -2.2
SDC3O75056 RPL21P1-201ENST00000399532 476 ntBASIC1.31□□□□□ -2.2
SDC3O75056 ELOCP21-201ENST00000412558 336 ntBASIC1.31□□□□□ -2.2
SDC3O75056 AC138393.2-201ENST00000414742 246 ntBASIC1.31□□□□□ -2.2
SDC3O75056 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.31□□□□□ -2.2
SDC3O75056 AC027119.1-201ENST00000440877 241 ntBASIC1.31□□□□□ -2.2
SDC3O75056 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC3O75056 RPS29P23-201ENST00000458635 123 ntBASIC1.31□□□□□ -2.2
SDC3O75056 RNU7-87P-201ENST00000459343 62 ntBASIC1.31□□□□□ -2.2
SDC3O75056 AC004223.1-201ENST00000479840 271 ntBASIC1.31□□□□□ -2.2
SDC3O75056 AC099513.1-201ENST00000490423 301 ntBASIC1.31□□□□□ -2.2
SDC3O75056 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC3O75056 PRDX4P1-201ENST00000507189 574 ntBASIC1.31□□□□□ -2.2
SDC3O75056 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.31□□□□□ -2.2
SDC3O75056 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.31□□□□□ -2.2
SDC3O75056 AC022217.4-201ENST00000604389 163 ntBASIC1.31□□□□□ -2.2
SDC3O75056 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC3O75056 AC104260.1-201ENST00000616660 539 ntBASIC1.31□□□□□ -2.2
SDC3O75056 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SDC3O75056 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.3□□□□□ -2.2
SDC3O75056 MIR26B-201ENST00000362251 77 ntBASIC1.3□□□□□ -2.2
SDC3O75056 RNA5SP109-201ENST00000391010 116 ntBASIC1.3□□□□□ -2.2
SDC3O75056 RPL30P13-201ENST00000418873 348 ntBASIC1.3□□□□□ -2.2
SDC3O75056 RPS27P16-201ENST00000425758 201 ntBASIC1.3□□□□□ -2.2
SDC3O75056 UQCRBP2-201ENST00000447827 297 ntBASIC1.3□□□□□ -2.2
SDC3O75056 U8.22-201ENST00000459141 133 ntBASIC1.3□□□□□ -2.2
SDC3O75056 RNU7-34P-201ENST00000459394 64 ntBASIC1.3□□□□□ -2.2
SDC3O75056 RNU6-107P-201ENST00000516643 102 ntBASIC1.3□□□□□ -2.2
SDC3O75056 MIR2355-201ENST00000517199 87 ntBASIC1.3□□□□□ -2.2
SDC3O75056 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.3□□□□□ -2.2
SDC3O75056 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.3□□□□□ -2.2
SDC3O75056 AC080078.3-201ENST00000605407 463 ntBASIC1.3□□□□□ -2.2
SDC3O75056 RNU6-1188P-201ENST00000363795 107 ntBASIC1.29□□□□□ -2.2
SDC3O75056 RNU6-879P-201ENST00000364328 108 ntBASIC1.29□□□□□ -2.2
SDC3O75056 Y_RNA.358-201ENST00000365491 99 ntBASIC1.29□□□□□ -2.2
SDC3O75056 Y_RNA.474-201ENST00000384341 102 ntBASIC1.29□□□□□ -2.2
SDC3O75056 SNORA75.6-201ENST00000391318 127 ntBASIC1.29□□□□□ -2.2
SDC3O75056 SDAD1P3-201ENST00000427380 333 ntBASIC1.29□□□□□ -2.2
SDC3O75056 AC092423.1-201ENST00000430165 186 ntBASIC1.29□□□□□ -2.2
SDC3O75056 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.29□□□□□ -2.2
SDC3O75056 AC098614.3-201ENST00000438957 440 ntBASIC1.29□□□□□ -2.2
SDC3O75056 AL606517.2-201ENST00000442855 241 ntBASIC1.29□□□□□ -2.2
SDC3O75056 MRPS10P1-201ENST00000448483 130 ntBASIC1.29□□□□□ -2.2
SDC3O75056 PCNPP5-201ENST00000452246 481 ntBASIC1.29□□□□□ -2.2
SDC3O75056 MTND4P17-201ENST00000470444 350 ntBASIC1.29□□□□□ -2.2
SDC3O75056 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.29□□□□□ -2.2
SDC3O75056 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.29□□□□□ -2.2
SDC3O75056 MIR4452-201ENST00000583004 71 ntBASIC1.29□□□□□ -2.2
SDC3O75056 AL357075.2-201ENST00000614906 189 ntBASIC1.29□□□□□ -2.2
SDC3O75056 AL078604.3-201ENST00000615580 211 ntBASIC1.29□□□□□ -2.2
SDC3O75056 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.29□□□□□ -2.2
SDC3O75056 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.28□□□□□ -2.2
SDC3O75056 RNA5SP361-201ENST00000362686 118 ntBASIC1.28□□□□□ -2.2
SDC3O75056 RNU6-1283P-201ENST00000365314 105 ntBASIC1.28□□□□□ -2.2
SDC3O75056 SNORD114-22-201ENST00000365423 72 ntBASIC1.28□□□□□ -2.2
SDC3O75056 RNU6-318P-201ENST00000384283 103 ntBASIC1.28□□□□□ -2.2
SDC3O75056 RNU6-1065P-201ENST00000384513 106 ntBASIC1.28□□□□□ -2.2
SDC3O75056 Y_RNA.577-201ENST00000384794 101 ntBASIC1.28□□□□□ -2.2
SDC3O75056 MIR489-201ENST00000384923 84 ntBASIC1.28□□□□□ -2.2
SDC3O75056 MTCYBP4-201ENST00000401524 249 ntBASIC1.28□□□□□ -2.2
SDC3O75056 RNU6-1186P-201ENST00000410429 97 ntBASIC1.28□□□□□ -2.2
SDC3O75056 RNU6-370P-201ENST00000411008 104 ntBASIC1.28□□□□□ -2.2
SDC3O75056 RPL23AP50-201ENST00000434149 455 ntBASIC1.28□□□□□ -2.2
SDC3O75056 AC005002.2-201ENST00000438228 269 ntBASIC1.28□□□□□ -2.2
SDC3O75056 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.28□□□□□ -2.2
SDC3O75056 RNU7-94P-201ENST00000459576 63 ntBASIC1.28□□□□□ -2.2
SDC3O75056 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.28□□□□□ -2.2
SDC3O75056 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.28□□□□□ -2.2
SDC3O75056 SNORA31.10-201ENST00000516482 106 ntBASIC1.28□□□□□ -2.2
SDC3O75056 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.28□□□□□ -2.2
SDC3O75056 AL442163.3-201ENST00000554110 156 ntBASIC1.28□□□□□ -2.2
SDC3O75056 AC008269.2-201ENST00000561915 1105 ntBASIC1.28□□□□□ -2.2
SDC3O75056 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.28□□□□□ -2.2
SDC3O75056 MIR5690-201ENST00000583739 73 ntBASIC1.28□□□□□ -2.2
SDC3O75056 MIR4438-201ENST00000585271 93 ntBASIC1.28□□□□□ -2.2
SDC3O75056 AL390123.1-201ENST00000603216 237 ntBASIC1.28□□□□□ -2.2
SDC3O75056 AL355073.2-201ENST00000612106 557 ntBASIC1.28□□□□□ -2.2
SDC3O75056 AC025253.1-201ENST00000613623 543 ntBASIC1.28□□□□□ -2.2
SDC3O75056 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.28□□□□□ -2.2
SDC3O75056 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
SDC3O75056 RNU6-1123P-201ENST00000362347 106 ntBASIC1.27□□□□□ -2.21
SDC3O75056 SNORD114-27-201ENST00000363766 70 ntBASIC1.27□□□□□ -2.21
SDC3O75056 SNORD26-201ENST00000384147 75 ntBASIC1.27□□□□□ -2.21
SDC3O75056 RNU6-1031P-201ENST00000384773 107 ntBASIC1.27□□□□□ -2.21
SDC3O75056 SNORA40.6-201ENST00000391153 128 ntBASIC1.27□□□□□ -2.21
SDC3O75056 MRPL42P3-201ENST00000401492 326 ntBASIC1.27□□□□□ -2.21
SDC3O75056 Y_RNA.646-201ENST00000410980 101 ntBASIC1.27□□□□□ -2.21
SDC3O75056 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.27□□□□□ -2.21
SDC3O75056 RNA5SP61-201ENST00000516453 100 ntBASIC1.27□□□□□ -2.21
SDC3O75056 RNU6-1213P-201ENST00000517075 94 ntBASIC1.27□□□□□ -2.21
SDC3O75056 AC022868.1-201ENST00000517767 391 ntBASIC1.27□□□□□ -2.21
SDC3O75056 AC018448.1-201ENST00000552843 316 ntBASIC1.27□□□□□ -2.21
SDC3O75056 AL929325.1-201ENST00000603096 117 ntBASIC1.27□□□□□ -2.21
SDC3O75056 AC113139.1-201ENST00000605049 239 ntBASIC1.27□□□□□ -2.21
SDC3O75056 MIR8054-201ENST00000620877 86 ntBASIC1.27□□□□□ -2.21
SDC3O75056 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
SDC3O75056 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms