Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC011604.1-201ENST00000545978 196 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.64□□□□□ -2.31
LSM1O15116 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.64□□□□□ -2.31
LSM1O15116 MIR3672-201ENST00000584290 82 ntBASIC0.64□□□□□ -2.31
LSM1O15116 MIR3192-201ENST00000584920 77 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AC136443.5-201ENST00000603741 370 ntBASIC0.64□□□□□ -2.31
LSM1O15116 AC063944.3-201ENST00000609969 533 ntBASIC0.64□□□□□ -2.31
LSM1O15116 uc_338.17-201ENST00000619633 179 ntBASIC0.64□□□□□ -2.31
LSM1O15116 MIR3974-201ENST00000637126 96 ntBASIC0.64□□□□□ -2.31
LSM1O15116 SNORA27.1-201ENST00000362604 124 ntBASIC0.63□□□□□ -2.31
LSM1O15116 Y_RNA.256-201ENST00000364594 104 ntBASIC0.63□□□□□ -2.31
LSM1O15116 RNU4-12P-201ENST00000365233 139 ntBASIC0.63□□□□□ -2.31
LSM1O15116 RNU6-117P-201ENST00000365415 107 ntBASIC0.63□□□□□ -2.31
LSM1O15116 RNU6-259P-201ENST00000383999 107 ntBASIC0.63□□□□□ -2.31
LSM1O15116 Y_RNA.530-201ENST00000384587 101 ntBASIC0.63□□□□□ -2.31
LSM1O15116 MIR1276-201ENST00000408707 83 ntBASIC0.63□□□□□ -2.31
LSM1O15116 RNU2-66P-201ENST00000410650 161 ntBASIC0.63□□□□□ -2.31
LSM1O15116 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.63□□□□□ -2.31
LSM1O15116 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.63□□□□□ -2.31
LSM1O15116 Z98949.2-201ENST00000440996 144 ntBASIC0.63□□□□□ -2.31
LSM1O15116 RPEP5-201ENST00000441137 268 ntBASIC0.63□□□□□ -2.31
LSM1O15116 AC233266.1-201ENST00000454518 96 ntBASIC0.63□□□□□ -2.31
LSM1O15116 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.63□□□□□ -2.31
LSM1O15116 Y_RNA.683-201ENST00000516508 93 ntBASIC0.63□□□□□ -2.31
LSM1O15116 RNU6-405P-201ENST00000516637 110 ntBASIC0.63□□□□□ -2.31
LSM1O15116 RNU6-256P-201ENST00000516747 97 ntBASIC0.63□□□□□ -2.31
LSM1O15116 AL358944.1-201ENST00000528537 144 ntBASIC0.63□□□□□ -2.31
LSM1O15116 MIR3684-201ENST00000579779 74 ntBASIC0.63□□□□□ -2.31
LSM1O15116 AL590095.2-201ENST00000604136 117 ntBASIC0.63□□□□□ -2.31
LSM1O15116 AC124303.1-201ENST00000605703 360 ntBASIC0.63□□□□□ -2.31
LSM1O15116 AC242852.1-201ENST00000612151 96 ntBASIC0.63□□□□□ -2.31
LSM1O15116 MIR6504-201ENST00000613520 61 ntBASIC0.63□□□□□ -2.31
LSM1O15116 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
LSM1O15116 MIR6835-201ENST00000621552 64 ntBASIC0.63□□□□□ -2.31
LSM1O15116 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.63□□□□□ -2.31
LSM1O15116 AC023934.1-201ENST00000574529 2389 ntBASIC0.62□□□□□ -2.31
LSM1O15116 RNU6-833P-201ENST00000363486 107 ntBASIC0.62□□□□□ -2.31
LSM1O15116 RNU6-110P-201ENST00000384508 104 ntBASIC0.62□□□□□ -2.31
LSM1O15116 AC018865.2-201ENST00000423631 129 ntBASIC0.62□□□□□ -2.31
LSM1O15116 FABP5P4-201ENST00000437203 171 ntBASIC0.62□□□□□ -2.31
LSM1O15116 MTATP6P13-201ENST00000438531 667 ntBASIC0.62□□□□□ -2.31
LSM1O15116 AC113410.1-201ENST00000505029 247 ntBASIC0.62□□□□□ -2.31
LSM1O15116 AC018710.1-201ENST00000506509 158 ntBASIC0.62□□□□□ -2.31
LSM1O15116 AC046134.1-201ENST00000514454 666 ntBASIC0.62□□□□□ -2.31
LSM1O15116 SNORD111.1-201ENST00000516421 86 ntBASIC0.62□□□□□ -2.31
LSM1O15116 DEFB108E-201ENST00000524692 240 ntBASIC0.62□□□□□ -2.31
LSM1O15116 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.62□□□□□ -2.31
LSM1O15116 AL512360.1-201ENST00000555346 234 ntBASIC0.62□□□□□ -2.31
LSM1O15116 RPL21P9-201ENST00000556149 474 ntBASIC0.62□□□□□ -2.31
LSM1O15116 7SK.7-201ENST00000603504 247 ntBASIC0.62□□□□□ -2.31
LSM1O15116 AC104465.1-201ENST00000611365 139 ntBASIC0.62□□□□□ -2.31
LSM1O15116 DISC2.1-201ENST00000612827 205 ntBASIC0.62□□□□□ -2.31
LSM1O15116 AC078883.4-201ENST00000623218 367 ntBASIC0.62□□□□□ -2.31
LSM1O15116 RNU6-1252P-201ENST00000363054 104 ntBASIC0.61□□□□□ -2.31
LSM1O15116 RNU6-595P-201ENST00000363944 107 ntBASIC0.61□□□□□ -2.31
LSM1O15116 Y_RNA.212-201ENST00000364177 102 ntBASIC0.61□□□□□ -2.31
LSM1O15116 ELOCP21-201ENST00000412558 336 ntBASIC0.61□□□□□ -2.31
LSM1O15116 MTND3P23-201ENST00000431980 347 ntBASIC0.61□□□□□ -2.31
LSM1O15116 AL137792.2-201ENST00000443484 235 ntBASIC0.61□□□□□ -2.31
LSM1O15116 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.61□□□□□ -2.31
LSM1O15116 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.61□□□□□ -2.31
LSM1O15116 RNU7-175P-201ENST00000515915 61 ntBASIC0.61□□□□□ -2.31
LSM1O15116 RNA5SP20-201ENST00000515976 84 ntBASIC0.61□□□□□ -2.31
LSM1O15116 RNU6-1114P-201ENST00000516022 107 ntBASIC0.61□□□□□ -2.31
LSM1O15116 FAM106DP-201ENST00000586416 501 ntBASIC0.61□□□□□ -2.31
LSM1O15116 AC005828.6-201ENST00000606610 232 ntBASIC0.61□□□□□ -2.31
LSM1O15116 AC092954.2-201ENST00000609103 430 ntBASIC0.61□□□□□ -2.31
LSM1O15116 AC019193.3-201ENST00000609144 554 ntBASIC0.61□□□□□ -2.31
LSM1O15116 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
LSM1O15116 MIR410-201ENST00000362222 80 ntBASIC0.6□□□□□ -2.31
LSM1O15116 Y_RNA.267-201ENST00000364679 109 ntBASIC0.6□□□□□ -2.31
LSM1O15116 Y_RNA.336-201ENST00000365307 109 ntBASIC0.6□□□□□ -2.31
LSM1O15116 RNU6-1335P-201ENST00000365426 107 ntBASIC0.6□□□□□ -2.31
LSM1O15116 Y_RNA.373-201ENST00000365600 103 ntBASIC0.6□□□□□ -2.31
LSM1O15116 RNU6-1264P-201ENST00000383891 107 ntBASIC0.6□□□□□ -2.31
LSM1O15116 RNU6-780P-201ENST00000391030 104 ntBASIC0.6□□□□□ -2.31
LSM1O15116 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
LSM1O15116 AL162413.1-201ENST00000603198 110 ntBASIC0.6□□□□□ -2.31
LSM1O15116 RN7SKP299-201ENST00000606679 301 ntBASIC0.6□□□□□ -2.31
LSM1O15116 AC245008.1-201ENST00000608123 476 ntBASIC0.6□□□□□ -2.31
LSM1O15116 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
LSM1O15116 RNU6-451P-201ENST00000362921 107 ntBASIC0.59□□□□□ -2.31
LSM1O15116 RNA5SP264-201ENST00000363115 107 ntBASIC0.59□□□□□ -2.31
LSM1O15116 Y_RNA.191-201ENST00000363972 113 ntBASIC0.59□□□□□ -2.31
LSM1O15116 RNU4-41P-201ENST00000364426 143 ntBASIC0.59□□□□□ -2.31
LSM1O15116 SNORA25.9-201ENST00000365087 128 ntBASIC0.59□□□□□ -2.31
LSM1O15116 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.59□□□□□ -2.31
LSM1O15116 Y_RNA.405-201ENST00000383979 100 ntBASIC0.59□□□□□ -2.31
LSM1O15116 Y_RNA.451-201ENST00000384200 100 ntBASIC0.59□□□□□ -2.31
LSM1O15116 Y_RNA.490-201ENST00000384413 102 ntBASIC0.59□□□□□ -2.31
LSM1O15116 Y_RNA.524-201ENST00000384564 100 ntBASIC0.59□□□□□ -2.31
LSM1O15116 Y_RNA.533-201ENST00000384596 114 ntBASIC0.59□□□□□ -2.31
LSM1O15116 Y_RNA.561-201ENST00000384694 100 ntBASIC0.59□□□□□ -2.31
LSM1O15116 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.59□□□□□ -2.31
LSM1O15116 RNU6-1291P-201ENST00000516591 104 ntBASIC0.59□□□□□ -2.31
LSM1O15116 CYP3A137P-201ENST00000562436 69 ntBASIC0.59□□□□□ -2.31
LSM1O15116 AC125232.2-201ENST00000592457 143 ntBASIC0.59□□□□□ -2.31
LSM1O15116 Z99129.1-201ENST00000612510 255 ntBASIC0.59□□□□□ -2.31
LSM1O15116 AL008636.1-201ENST00000625038 1018 ntBASIC0.59□□□□□ -2.31
LSM1O15116 AC027279.3-201ENST00000625055 122 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms