Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-711P-201ENST00000517255 106 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 AC087685.1-201ENST00000587507 141 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
USP3Q9Y6I4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
USP3Q9Y6I4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
USP3Q9Y6I4 MTND5P18-201ENST00000445624 1801 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 RHEBP3-201ENST00000411920 351 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 AC123900.1-201ENST00000420390 96 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 AL159169.1-201ENST00000421119 127 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 AC017083.1-201ENST00000428093 483 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 AC025750.2-201ENST00000442609 450 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 AL357552.1-201ENST00000445254 415 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.61□□□□□ -1.83
USP3Q9Y6I4 RNU6-1096P-201ENST00000517089 102 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.61□□□□□ -1.83
USP3Q9Y6I4 AC074050.1-201ENST00000563247 211 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 AC012314.7-201ENST00000619693 93 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 MIR5739-201ENST00000619803 80 ntBASIC3.61□□□□□ -1.83
USP3Q9Y6I4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
USP3Q9Y6I4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP3Q9Y6I4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.61□□□□□ -1.83
USP3Q9Y6I4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 MIR423-201ENST00000362201 94 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 Y_RNA.495-201ENST00000384435 112 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 RNA5SP136-201ENST00000410906 107 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 RPS15AP28-201ENST00000435088 386 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 HMGN1P7-201ENST00000491722 313 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 SNORD59.2-201ENST00000516873 68 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 SCARNA3-201ENST00000517097 143 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 AC002064.3-201ENST00000623448 346 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 MIR1248-201ENST00000629190 106 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 AC110079.1-202ENST00000635213 138 ntBASIC3.6□□□□□ -1.83
USP3Q9Y6I4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP3Q9Y6I4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
USP3Q9Y6I4 Y_RNA.281-201ENST00000364774 94 ntBASIC3.59□□□□□ -1.83
USP3Q9Y6I4 Y_RNA.332-201ENST00000365271 113 ntBASIC3.59□□□□□ -1.83
USP3Q9Y6I4 MIR548A1-201ENST00000385041 97 ntBASIC3.59□□□□□ -1.83
USP3Q9Y6I4 RNU2-32P-201ENST00000411193 191 ntBASIC3.59□□□□□ -1.83
USP3Q9Y6I4 Y_RNA.714-201ENST00000517065 90 ntBASIC3.59□□□□□ -1.83
USP3Q9Y6I4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.59□□□□□ -1.83
USP3Q9Y6I4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
USP3Q9Y6I4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USP3Q9Y6I4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
USP3Q9Y6I4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.84
USP3Q9Y6I4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 RNU1-96P-201ENST00000364163 162 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 RNA5SP72-201ENST00000364442 117 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 MIR34B-201ENST00000385076 84 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 AL513477.1-202ENST00000417061 214 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 AC021205.2-201ENST00000480069 347 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 AC093259.1-201ENST00000509755 300 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 RNA5SP236-201ENST00000516169 116 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 SNORA70.19-201ENST00000516717 90 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 AL358944.1-201ENST00000528537 144 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 MIR3944-201ENST00000581277 108 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 AC007229.1-201ENST00000590455 412 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 U2.20-201ENST00000613956 192 ntBASIC3.58□□□□□ -1.84
USP3Q9Y6I4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.58□□□□□ -1.84
USP3Q9Y6I4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP3Q9Y6I4 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.57□□□□□ -1.84
USP3Q9Y6I4 MIR208A-201ENST00000362287 71 ntBASIC3.57□□□□□ -1.84
USP3Q9Y6I4 RNU6-888P-201ENST00000363010 101 ntBASIC3.57□□□□□ -1.84
USP3Q9Y6I4 Y_RNA.116-201ENST00000363292 103 ntBASIC3.57□□□□□ -1.84
USP3Q9Y6I4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP3Q9Y6I4 MIR95-201ENST00000385072 81 ntBASIC3.57□□□□□ -1.84
USP3Q9Y6I4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.57□□□□□ -1.84
USP3Q9Y6I4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.57□□□□□ -1.84
USP3Q9Y6I4 AC024614.2-201ENST00000577584 372 ntBASIC3.57□□□□□ -1.84
USP3Q9Y6I4 AC107294.3-201ENST00000609211 526 ntBASIC3.57□□□□□ -1.84
USP3Q9Y6I4 RNVU1-4-201ENST00000612985 164 ntBASIC3.57□□□□□ -1.84
USP3Q9Y6I4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP3Q9Y6I4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
USP3Q9Y6I4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP3Q9Y6I4 AC018630.2-201ENST00000534866 2403 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 RNVU1-14-201ENST00000384770 164 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 Z98941.1-201ENST00000407764 100 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 PRSS3P4-201ENST00000453323 162 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 AC091153.1-201ENST00000466297 402 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 SEM1P1-201ENST00000506694 209 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 RNU7-99P-201ENST00000516271 62 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 RNU6-965P-201ENST00000516721 96 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms