Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 DEFB108E-201ENST00000524692 240 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.489-201ENST00000384410 101 ntBASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.510-201ENST00000384511 114 ntBASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 U3.40-201ENST00000408706 208 ntBASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-57P-201ENST00000411348 103 ntBASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 UBE2DNL-203ENST00000474922 222 ntBASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 SDR42E1P4-201ENST00000620894 481 ntBASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 U6.115-201ENST00000636045 103 ntBASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.307-201ENST00000365022 117 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-1318P-201ENST00000365389 103 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-847P-201ENST00000411115 108 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AC016717.1-201ENST00000448918 286 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AC010531.2-201ENST00000465012 153 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 SNORA70.12-201ENST00000516084 153 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AC005828.6-201ENST00000606610 232 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AC090425.1-201ENST00000610007 140 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AC013412.1-201ENST00000610687 192 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AC009831.4-201ENST00000620744 325 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AC006435.5-201ENST00000624486 112 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AL136360.1-201ENST00000503377 1900 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 AL159152.1-201ENST00000635019 2587 ntBASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.63□□□□□ -1.99
LIMCH1Q9UPQ0 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 SNORA25.1-201ENST00000362326 128 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.16-201ENST00000362421 102 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-379P-201ENST00000363813 104 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-324P-201ENST00000363957 106 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 SNORD115-30-201ENST00000364117 82 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.352-201ENST00000365439 102 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-514P-201ENST00000384208 107 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-1072P-201ENST00000384703 107 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-443P-201ENST00000384780 107 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU2-38P-201ENST00000410856 79 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU1-131P-201ENST00000458943 161 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 AC010598.1-201ENST00000510378 103 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 HMGB3P3-201ENST00000510526 400 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-436P-201ENST00000516171 114 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 AC025647.1-201ENST00000517879 253 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 MIR3668-201ENST00000582138 75 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 AC012433.1-201ENST00000588916 398 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 AP006437.1-201ENST00000641440 3685 ntBASIC2.62□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-1240P-201ENST00000365155 104 ntBASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.447-201ENST00000384184 113 ntBASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 SNORD14D-201ENST00000384390 87 ntBASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-710P-201ENST00000410424 105 ntBASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 RNA5SP281-201ENST00000516504 135 ntBASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-856P-201ENST00000516959 98 ntBASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 MIR3126-201ENST00000577443 74 ntBASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
LIMCH1Q9UPQ0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-271P-201ENST00000363858 105 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.361-201ENST00000365515 120 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-160P-201ENST00000384591 107 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 SNORA67.4-201ENST00000384688 142 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 MIR221-201ENST00000385135 110 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 MIR29C-201ENST00000385231 88 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 AL031003.1-201ENST00000404229 172 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 RPL23AP3-201ENST00000453844 468 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-1023P-201ENST00000516137 106 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 SCARNA24.2-201ENST00000516968 130 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 MIR3162-201ENST00000581818 82 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 MIR6895-201ENST00000613497 78 ntBASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
LIMCH1Q9UPQ0 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.329-201ENST00000365209 107 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.416-201ENST00000384014 113 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 RNU1-148P-201ENST00000384472 162 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-907P-201ENST00000390924 102 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-1146P-201ENST00000516282 102 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-966P-201ENST00000516479 104 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 MIR5002-201ENST00000584713 97 ntBASIC2.59□□□□□ -1.99
LIMCH1Q9UPQ0 AL512605.2-201ENST00000592972 256 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms