Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.78□□□□□ -1.96
SHROOM4Q9ULL8 MIR8074-201ENST00000615081 81 ntBASIC2.78□□□□□ -1.96
SHROOM4Q9ULL8 MIR6734-201ENST00000621166 68 ntBASIC2.78□□□□□ -1.96
SHROOM4Q9ULL8 Y_RNA.415-201ENST00000384012 112 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 AL353997.1-201ENST00000432936 108 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 HMGN2P34-201ENST00000437647 269 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 SCARNA16.2-201ENST00000516520 172 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 RNA5SP504-201ENST00000410676 117 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 POLR2J4-204ENST00000418424 324 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 HMGB3P17-201ENST00000504195 649 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-107P-201ENST00000516643 102 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 RNA5SP481-201ENST00000516814 122 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 AC011604.1-201ENST00000545978 196 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 AC113139.1-201ENST00000605049 239 ntBASIC2.77□□□□□ -1.97
SHROOM4Q9ULL8 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-1266P-201ENST00000362794 105 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-414P-201ENST00000363705 104 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-296P-201ENST00000384608 107 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 Y_RNA.557-201ENST00000384680 107 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 MIR30A-201ENST00000385092 71 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 HMGN2P38-201ENST00000423806 265 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 EIF1P2-201ENST00000428233 350 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 RNU1-142P-201ENST00000516682 145 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 MIR3198-2-201ENST00000577868 80 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 AC098657.3-201ENST00000620434 263 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 AL669831.3-213ENST00000636676 183 ntBASIC2.76□□□□□ -1.97
SHROOM4Q9ULL8 Y_RNA.142-201ENST00000363491 102 ntBASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-1080P-201ENST00000383982 107 ntBASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 MIR1304-201ENST00000408243 91 ntBASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 MIR2355-201ENST00000517199 87 ntBASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 AL137100.2-201ENST00000555786 315 ntBASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 MIR6788-201ENST00000618842 66 ntBASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 uc_338.20-201ENST00000621563 178 ntBASIC2.75□□□□□ -1.97
SHROOM4Q9ULL8 RNA5SP323-201ENST00000391094 133 ntBASIC2.74□□□□□ -1.97
SHROOM4Q9ULL8 RNU4-14P-201ENST00000410858 122 ntBASIC2.74□□□□□ -1.97
SHROOM4Q9ULL8 AC092423.1-201ENST00000430165 186 ntBASIC2.74□□□□□ -1.97
SHROOM4Q9ULL8 PCNPP5-201ENST00000452246 481 ntBASIC2.74□□□□□ -1.97
SHROOM4Q9ULL8 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.74□□□□□ -1.97
SHROOM4Q9ULL8 AC091144.1-201ENST00000519573 138 ntBASIC2.74□□□□□ -1.97
SHROOM4Q9ULL8 AC024995.1-201ENST00000523014 93 ntBASIC2.74□□□□□ -1.97
SHROOM4Q9ULL8 MIR598-201ENST00000384868 97 ntBASIC2.73□□□□□ -1.97
SHROOM4Q9ULL8 HSPE1P9-201ENST00000440046 311 ntBASIC2.73□□□□□ -1.97
SHROOM4Q9ULL8 MTND4P18-201ENST00000447010 465 ntBASIC2.73□□□□□ -1.97
SHROOM4Q9ULL8 AC008834.1-201ENST00000511612 175 ntBASIC2.73□□□□□ -1.97
SHROOM4Q9ULL8 HSBP1P1-201ENST00000555205 166 ntBASIC2.73□□□□□ -1.97
SHROOM4Q9ULL8 AC004584.2-201ENST00000570407 410 ntBASIC2.73□□□□□ -1.97
SHROOM4Q9ULL8 AC005730.3-201ENST00000583067 366 ntBASIC2.73□□□□□ -1.97
SHROOM4Q9ULL8 UBE2V2P2-201ENST00000587677 504 ntBASIC2.73□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-222P-201ENST00000362438 107 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-1145P-201ENST00000384246 107 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-370P-201ENST00000411008 104 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 AC114482.1-201ENST00000418010 247 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 AC245047.4-201ENST00000433189 144 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 RPS29P29-201ENST00000456396 171 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 MIR2053-201ENST00000459295 91 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 AC025465.3-201ENST00000510570 311 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 AC074133.1-201ENST00000515696 183 ntBASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-879P-201ENST00000364328 108 ntBASIC2.71□□□□□ -1.97
SHROOM4Q9ULL8 RNU6-99P-201ENST00000364721 107 ntBASIC2.71□□□□□ -1.97
SHROOM4Q9ULL8 Y_RNA.287-201ENST00000364853 94 ntBASIC2.71□□□□□ -1.97
SHROOM4Q9ULL8 Y_RNA.390-201ENST00000383932 102 ntBASIC2.71□□□□□ -1.97
SHROOM4Q9ULL8 MIR320A-201ENST00000385302 82 ntBASIC2.71□□□□□ -1.97
SHROOM4Q9ULL8 RNU6ATAC20P-201ENST00000408436 127 ntBASIC2.71□□□□□ -1.97
SHROOM4Q9ULL8 RNU4ATAC11P-201ENST00000515939 126 ntBASIC2.71□□□□□ -1.97
SHROOM4Q9ULL8 AL360085.1-201ENST00000604713 532 ntBASIC2.71□□□□□ -1.97
SHROOM4Q9ULL8 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 RNU6-1188P-201ENST00000363795 107 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 Y_RNA.358-201ENST00000365491 99 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 Y_RNA.577-201ENST00000384794 101 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 MIR329-1-201ENST00000385028 80 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 RNA5SP467-201ENST00000391274 118 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 RNU6-1156P-201ENST00000410365 100 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 MTND4P17-201ENST00000470444 350 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 APOOP3-201ENST00000536787 586 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 AK6P2-201ENST00000549020 471 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 AC133104.2-201ENST00000615272 193 ntBASIC2.71□□□□□ -1.98
SHROOM4Q9ULL8 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 U8.1-201ENST00000362843 134 ntBASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 SNORA72.1-201ENST00000363485 129 ntBASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 SNORA63D-201ENST00000364359 132 ntBASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 Y_RNA.384-201ENST00000383909 102 ntBASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 Y_RNA.387-201ENST00000383918 102 ntBASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 Y_RNA.498-201ENST00000384460 102 ntBASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 MIR625-201ENST00000385047 85 ntBASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 MIR934-201ENST00000401241 83 ntBASIC2.7□□□□□ -1.98
SHROOM4Q9ULL8 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms