Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 AC105029.1-201ENST00000520250 669 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 AC024995.1-201ENST00000523014 93 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 AC125232.2-201ENST00000592457 143 ntBASIC1.4□□□□□ -2.19
VPS54Q9P1Q0 AL391987.6-201ENST00000305671 199 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 Y_RNA.358-201ENST00000365491 99 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 AL161935.2-201ENST00000414627 60 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 MTCYBP10-201ENST00000424905 650 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 RPL23AP50-201ENST00000434149 455 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 RPS27P1-201ENST00000450552 247 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 RNA5SP445-201ENST00000515889 115 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 RNU6-902P-201ENST00000517212 91 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 MIR4709-201ENST00000577272 72 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 AL929325.1-201ENST00000603096 117 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 AC073413.2-201ENST00000604332 360 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 snoU13.31-201ENST00000607291 104 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 AL357075.2-201ENST00000614906 189 ntBASIC1.39□□□□□ -2.19
VPS54Q9P1Q0 RNA5SP361-201ENST00000362686 118 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 RNU6-1266P-201ENST00000362794 105 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 RNU6-879P-201ENST00000364328 108 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 SNORD81.2-201ENST00000365153 76 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 MIR194-1-201ENST00000384892 85 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 RNU6-1304P-201ENST00000411374 106 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 RPL30P13-201ENST00000418873 348 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AC092423.1-201ENST00000430165 186 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AC245517.4-201ENST00000448601 281 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 RNU7-34P-201ENST00000459394 64 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AC116353.2-201ENST00000505332 712 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AC079140.2-201ENST00000506193 142 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 RNU6-120P-201ENST00000516077 103 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AL442163.3-201ENST00000554110 156 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AL137100.2-201ENST00000555786 315 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AC022217.4-201ENST00000604389 163 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 MIR1244-1-201ENST00000612829 85 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 U6.73-201ENST00000619194 103 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AC092794.2-201ENST00000620933 563 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 MIR1244-3-201ENST00000635744 85 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 MIR1244-2-201ENST00000636449 85 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 MIR1244-4-202ENST00000636813 85 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.38□□□□□ -2.19
VPS54Q9P1Q0 MIR26B-201ENST00000362251 77 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 RNU6-1145P-201ENST00000384246 107 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 ELOCP21-201ENST00000412558 336 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AL163540.1-201ENST00000485382 386 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AC093852.1-201ENST00000503587 266 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 SNORA31.10-201ENST00000516482 106 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 RNU7-128P-201ENST00000517247 62 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AC022868.1-201ENST00000517767 391 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AC023157.2-201ENST00000540596 141 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AC015688.6-201ENST00000577737 104 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AC022432.1-201ENST00000595739 310 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AC016727.1-205ENST00000605437 569 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AC099654.5-201ENST00000636479 350 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 AL669831.3-213ENST00000636676 183 ntBASIC1.37□□□□□ -2.19
VPS54Q9P1Q0 RNU6-99P-201ENST00000364721 107 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 MRPL35P1-201ENST00000404272 572 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AC015922.2-201ENST00000435593 184 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AL135790.2-201ENST00000437701 267 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AC027119.1-201ENST00000440877 241 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 UQCRBP2-201ENST00000447827 297 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 RPL17P19-201ENST00000489069 552 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AC010469.2-201ENST00000496412 480 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 RNU7-99P-201ENST00000516271 62 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 Y_RNA.691-201ENST00000516611 103 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AC019176.1-201ENST00000518519 225 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 APOOP3-201ENST00000536787 586 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AC004584.2-201ENST00000570407 410 ntBASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
VPS54Q9P1Q0 Y_RNA.338-201ENST00000365320 114 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 MIR150-201ENST00000385048 84 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 RPL23AP36-201ENST00000413895 458 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 PCNPP5-201ENST00000452246 481 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 RPS26P45-201ENST00000471748 340 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 RPS27P22-201ENST00000478056 241 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 AC099513.1-201ENST00000490423 301 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 AC108729.3-201ENST00000513484 108 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 MIR4498-201ENST00000577599 66 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 MIR3937-201ENST00000580135 106 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 AC005899.2-201ENST00000584353 90 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 MIR4438-201ENST00000585271 93 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms