Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNU1-48P-201ENST00000516400 162 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 MIR4643-201ENST00000577473 78 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 MIR3124-201ENST00000582636 67 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 BX284668.6-201ENST00000606899 438 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
TDP1Q9NUW8 RNA5SP289-201ENST00000362332 137 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.275-201ENST00000364726 110 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 RNU6-740P-201ENST00000364734 105 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 RNU6-338P-201ENST00000383888 105 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.552-201ENST00000384665 112 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 SNORD58.1-201ENST00000391313 66 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 AL359511.1-201ENST00000402970 211 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 MIR1262-201ENST00000408276 93 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 SNORD88.1-201ENST00000408684 91 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 SUMO1P2-201ENST00000452524 304 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
TDP1Q9NUW8 SNORA27.4-201ENST00000516650 95 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 AL512605.2-201ENST00000592972 256 ntBASIC2.59□□□□□ -1.99
TDP1Q9NUW8 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.59□□□□□ -2
TDP1Q9NUW8 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
TDP1Q9NUW8 UBE2WP1-201ENST00000362030 340 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 Y_RNA.65-201ENST00000362846 100 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 SNORA20B-201ENST00000384220 132 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 RNU4-53P-201ENST00000410828 140 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 RNU2-61P-201ENST00000411069 191 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 AC008134.1-201ENST00000420943 193 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 RPL39P40-201ENST00000445481 146 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 RN7SL636P-201ENST00000497504 294 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 RNU6-856P-201ENST00000516959 98 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 AC087441.2-201ENST00000529141 262 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.58□□□□□ -2
TDP1Q9NUW8 AC141273.2-201ENST00000618989 130 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.58□□□□□ -2
TDP1Q9NUW8 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.58□□□□□ -2
TDP1Q9NUW8 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.57□□□□□ -2
TDP1Q9NUW8 VTRNA1-1-201ENST00000363120 99 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 Y_RNA.99-201ENST00000363138 105 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 Y_RNA.124-201ENST00000363339 93 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 RNU6-662P-201ENST00000384253 104 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 RNA5SP210-201ENST00000391034 120 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 SNORA3.2-201ENST00000408221 125 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 AC024067.1-201ENST00000426199 223 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 AL121890.1-201ENST00000435457 205 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 AC010598.1-201ENST00000510378 103 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.57□□□□□ -2
TDP1Q9NUW8 CYCSP26-201ENST00000534107 320 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 MIR4658-201ENST00000584344 65 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 AC104984.5-201ENST00000586878 94 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 AL162424.1-201ENST00000602325 221 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.57□□□□□ -2
TDP1Q9NUW8 ZNF658B-202ENST00000615961 3375 ntBASIC2.57□□□□□ -2
TDP1Q9NUW8 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
TDP1Q9NUW8 U8.2-201ENST00000363156 134 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 Y_RNA.117-201ENST00000363294 101 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 RNA5SP456-201ENST00000364002 114 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 Y_RNA.269-201ENST00000364685 89 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 RNU6-1240P-201ENST00000365155 104 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 RNU1-148P-201ENST00000384472 162 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 RNU6-1248P-201ENST00000391096 64 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 MIR873-201ENST00000401120 77 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 RNU6-651P-201ENST00000411040 105 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 EDDM3CP-201ENST00000415977 425 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.56□□□□□ -2
TDP1Q9NUW8 RN7SL297P-201ENST00000483161 293 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.56□□□□□ -2
TDP1Q9NUW8 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.56□□□□□ -2
TDP1Q9NUW8 SNORA70.12-201ENST00000516084 153 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 AC027419.1-201ENST00000522976 328 ntBASIC2.56□□□□□ -2
TDP1Q9NUW8 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.56□□□□□ -2
TDP1Q9NUW8 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.56□□□□□ -2
TDP1Q9NUW8 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
TDP1Q9NUW8 SNORA27.1-201ENST00000362604 124 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 Y_RNA.76-201ENST00000362931 109 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 SNORA38-201ENST00000363946 132 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 Y_RNA.217-201ENST00000364214 105 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
TDP1Q9NUW8 RNU6-1289P-201ENST00000384431 106 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 RNU2-14P-201ENST00000411053 191 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 AL135790.2-201ENST00000437701 267 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 RPL23AP7-203ENST00000449021 469 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.55□□□□□ -2
TDP1Q9NUW8 Y_RNA.641-201ENST00000459414 105 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 AC234781.5-201ENST00000508429 271 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 MIR4446-201ENST00000578505 67 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 MIR3668-201ENST00000582138 75 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 MIR5092-201ENST00000583139 88 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 AC022202.1-201ENST00000613515 211 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 MIR6715A-201ENST00000615929 79 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 FO624990.1-201ENST00000636373 85 ntBASIC2.55□□□□□ -2
TDP1Q9NUW8 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
TDP1Q9NUW8 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
TDP1Q9NUW8 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
TDP1Q9NUW8 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
TDP1Q9NUW8 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
TDP1Q9NUW8 SNORD114-7-201ENST00000362520 77 ntBASIC2.54□□□□□ -2
TDP1Q9NUW8 SNORD114-6-201ENST00000364393 72 ntBASIC2.54□□□□□ -2
TDP1Q9NUW8 Y_RNA.515-201ENST00000384535 112 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms