Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RPL30P16-201ENST00000419341 429 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 AC092423.1-201ENST00000430165 186 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 RPL23AP50-201ENST00000434149 455 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 HMGN2P26-201ENST00000463169 339 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 AC010598.1-201ENST00000510378 103 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 AC093303.1-201ENST00000514549 295 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 RNU6-341P-201ENST00000516973 96 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 AC093913.1-201ENST00000614178 329 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 AC068137.4-201ENST00000638485 296 ntBASIC0.41□□□□□ -2.34
VCX3AQ9NNX9 RNU6-254P-201ENST00000363377 107 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 RNU6-53P-201ENST00000365367 106 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.409-201ENST00000383990 98 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 RNU6-17P-201ENST00000384245 107 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 RNU6-18P-201ENST00000384527 107 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 RNU6-95P-201ENST00000384697 107 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 RNU6-541P-201ENST00000384709 110 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 MIR764-201ENST00000390811 85 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 FGF7P8-201ENST00000402994 292 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AC244023.1-201ENST00000426884 112 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 PCMTD1P1-201ENST00000455560 355 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AP003716.2-201ENST00000528260 108 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AC133485.1-201ENST00000567176 124 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AC138907.6-201ENST00000568401 126 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AC025627.3-201ENST00000582078 182 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 7SK.7-201ENST00000603504 247 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AC242498.1-201ENST00000604134 111 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AC121247.2-201ENST00000604776 136 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 RNU6-89P-201ENST00000606519 100 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 AC243994.1-201ENST00000618627 109 ntBASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.4□□□□□ -2.35
VCX3AQ9NNX9 RNU5F-3P-201ENST00000363767 117 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.179-201ENST00000363844 90 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.372-201ENST00000365599 102 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 RNA5SP482-201ENST00000391269 118 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 AL590632.1-201ENST00000424289 371 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 ERLEC1P1-201ENST00000433806 578 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 RNU6-1291P-201ENST00000516591 104 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 MTND4LP26-201ENST00000518144 282 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 AP002004.2-201ENST00000531656 154 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 RPL21P9-201ENST00000556149 474 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 POLR3GP2-201ENST00000588366 668 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 AC007014.2-201ENST00000615581 479 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 SEPT14P17-201ENST00000617978 177 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 AL008636.1-201ENST00000625038 1018 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 AC099654.12-201ENST00000639868 649 ntBASIC0.39□□□□□ -2.35
VCX3AQ9NNX9 MIR103A2-201ENST00000362154 78 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 SNORA25.3-201ENST00000363205 127 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.359-201ENST00000365498 102 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 RNU6-1237P-201ENST00000384777 107 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 MIR562-201ENST00000384894 95 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 MIR517A-201ENST00000385001 87 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 MTND2P9-201ENST00000422293 931 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 AC018865.2-201ENST00000423631 129 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 NDUFA5P4-201ENST00000436704 385 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 Z98949.2-201ENST00000440996 144 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 MTCO1P19-201ENST00000443487 500 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 MTND1P11-201ENST00000456661 876 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 AC018710.1-201ENST00000506509 158 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.665-201ENST00000516177 98 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 AC134698.4-201ENST00000523451 826 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 AP000942.3-201ENST00000603702 160 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 AC068137.3-201ENST00000639191 341 ntBASIC0.38□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.336-201ENST00000365307 109 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 SNORA20B-201ENST00000384220 132 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.481-201ENST00000384373 102 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.553-201ENST00000384670 102 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 MIR1185-1-201ENST00000408598 86 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 RNU6-1068P-201ENST00000410958 103 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AC114737.2-201ENST00000421583 173 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AC244098.3-201ENST00000424803 96 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 HMGN1P7-201ENST00000491722 313 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 ACA59.1-201ENST00000515966 143 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AC010620.1-201ENST00000601088 1102 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 AC010999.1-201ENST00000611856 324 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
VCX3AQ9NNX9 RNU6-1252P-201ENST00000363054 104 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 RNU4-41P-201ENST00000364426 143 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 RNY1P8-201ENST00000383970 114 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 RNU6-376P-201ENST00000384731 106 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 RNU1-119P-201ENST00000391122 165 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 MIR891A-201ENST00000401237 79 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 ZNF885P-201ENST00000420174 1098 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms