Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC073910.1-201ENST00000445047 438 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 RPS27P1-201ENST00000450552 247 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 AC112492.4-201ENST00000456549 352 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 RPS27P22-201ENST00000478056 241 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 RNU6-966P-201ENST00000516479 104 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 RNU1-142P-201ENST00000516682 145 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 RNU2-12P-201ENST00000517216 168 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 MIR3684-201ENST00000579779 74 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 MIR4438-201ENST00000585271 93 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 AC116312.1-201ENST00000606841 314 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 AL138825.1-201ENST00000618587 192 ntBASIC1.72□□□□□ -2.13
CHMP1AQ9HD42 RNU6-661P-201ENST00000362409 107 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 SNORA27.1-201ENST00000362604 124 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.148-201ENST00000363557 117 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 SNORA4.2-201ENST00000365313 147 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.458-201ENST00000384240 102 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 RNA5SP109-201ENST00000391010 116 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 MIR1302-11-201ENST00000408051 138 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 MIR1302-9-201ENST00000408365 138 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 MIR1302-10-201ENST00000408734 138 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 MTND1P14-201ENST00000427400 950 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 AC069257.2-201ENST00000441819 155 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 RNU7-99P-201ENST00000516271 62 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 HSBP1P1-201ENST00000555205 166 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 MIR1302-2-201ENST00000607096 138 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 AC010205.1-201ENST00000616668 449 ntBASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.71□□□□□ -2.14
CHMP1AQ9HD42 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 MTND5P6-201ENST00000422338 1798 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.124-201ENST00000363339 93 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 AL079342.1-201ENST00000401460 267 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 RNU2-7P-201ENST00000410794 178 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 RNU6-1199P-201ENST00000411249 104 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 RNU6-475P-201ENST00000516073 104 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 MIR3162-201ENST00000581818 82 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 AC005176.2-201ENST00000596933 147 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 AC022217.4-201ENST00000604389 163 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.7□□□□□ -2.14
CHMP1AQ9HD42 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.28-201ENST00000362554 111 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 RNU1-22P-201ENST00000363334 158 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 SNORD115-30-201ENST00000364117 82 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 RNU6-407P-201ENST00000365280 104 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.361-201ENST00000365515 120 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 RNA5SP489-201ENST00000410986 109 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 HSPE1P21-201ENST00000438283 308 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 HMGN2P23-201ENST00000456759 269 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.631-201ENST00000459607 101 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 AC097462.1-201ENST00000514125 324 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 RNA5SP20-201ENST00000515976 84 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 RPS29P30-201ENST00000600975 111 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.783-201ENST00000613546 102 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 AC005592.1-201ENST00000566527 1640 ntBASIC1.69□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.128-201ENST00000363391 112 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 RNU6-360P-201ENST00000390944 104 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.645-201ENST00000391229 102 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 MIR873-201ENST00000401120 77 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 MTCO2P12-201ENST00000427426 682 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 AC093852.1-201ENST00000503587 266 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 RNA5SP481-201ENST00000516814 122 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 AC040926.1-201ENST00000530195 238 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 MIR4423-201ENST00000580922 80 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 AL121655.1-201ENST00000605811 308 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 AL021879.1-201ENST00000611756 288 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 AC134503.1-201ENST00000633048 54 ntBASIC1.68□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.230-201ENST00000364348 109 ntBASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 RPL21P1-201ENST00000399532 476 ntBASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 RNU2-54P-201ENST00000410299 190 ntBASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 SNORA25.10-201ENST00000515926 124 ntBASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 SNORA31.10-201ENST00000516482 106 ntBASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 RNU7-172P-201ENST00000517125 64 ntBASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 AC073413.2-201ENST00000604332 360 ntBASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 PART1_1.1-201ENST00000611761 217 ntBASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHMP1AQ9HD42 RNU6-271P-201ENST00000363858 105 ntBASIC1.66□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.216-201ENST00000364205 93 ntBASIC1.66□□□□□ -2.14
CHMP1AQ9HD42 SNORD14.1-201ENST00000365609 90 ntBASIC1.66□□□□□ -2.14
CHMP1AQ9HD42 SNORA22B-201ENST00000383876 138 ntBASIC1.66□□□□□ -2.14
CHMP1AQ9HD42 Y_RNA.446-201ENST00000384178 104 ntBASIC1.66□□□□□ -2.14
CHMP1AQ9HD42 SNORA67.3-201ENST00000384366 140 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms