Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC010620.1-201ENST00000601088 1102 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 GHRLOS.1-201ENST00000610995 70 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AC073349.3-201ENST00000617616 186 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AC006504.8-201ENST00000621046 635 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AC008133.2-201ENST00000624540 351 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 MIR6863-201ENST00000636112 90 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU4-79P-201ENST00000362764 141 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.135-201ENST00000363439 95 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.151-201ENST00000363566 112 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 RNU6-873P-201ENST00000363833 107 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.363-201ENST00000365529 113 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 RNU6-259P-201ENST00000383999 107 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 MIR153-2-201ENST00000385225 87 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 SNORD41-201ENST00000386967 70 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 MTCO3P40-201ENST00000392516 676 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 RNU6-908P-201ENST00000410160 94 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 RNU2-66P-201ENST00000410650 161 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 AC006461.1-201ENST00000412637 326 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 DAP3P1-201ENST00000441522 278 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 SNORD65B-201ENST00000459126 73 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 RNU7-66P-201ENST00000459469 62 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 AC019235.1-201ENST00000503847 207 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 SNORA31.4-201ENST00000516049 129 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.665-201ENST00000516177 98 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 MIR1273G-201ENST00000577677 100 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.61□□□□□ -2.31
LMX1AQ8TE12 AL138726.1-201ENST00000614873 333 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 AC009248.2-201ENST00000619826 254 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 AP000770.2-201ENST00000623694 100 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 AC006435.5-201ENST00000624486 112 ntBASIC0.61□□□□□ -2.31
LMX1AQ8TE12 SNORD114-24-201ENST00000365029 72 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.319-201ENST00000365138 92 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.372-201ENST00000365599 102 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 MIR100-201ENST00000385259 80 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 RNU6-1186P-201ENST00000410429 97 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC114482.1-201ENST00000418010 247 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC002429.1-201ENST00000437672 148 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC245047.7-201ENST00000440265 293 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.6□□□□□ -2.31
LMX1AQ8TE12 PCMTD1P1-201ENST00000455560 355 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC091179.3-201ENST00000474761 144 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC048334.1-201ENST00000477975 159 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 RPS26P48-201ENST00000491713 339 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC010486.3-201ENST00000511602 785 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC093303.1-201ENST00000514549 295 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 SNORA31.2-201ENST00000516019 134 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 SNORD79.1-201ENST00000516069 84 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC090049.2-201ENST00000550377 109 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 RN7SKP299-201ENST00000606679 301 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 Z99129.1-201ENST00000612510 255 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 SNORD3E-202ENST00000627253 216 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC010487.4-201ENST00000637027 61 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AC068137.4-201ENST00000638485 296 ntBASIC0.6□□□□□ -2.31
LMX1AQ8TE12 AL589743.1-201ENST00000551932 2712 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 RNU6-280P-201ENST00000364145 104 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 RNU4-76P-201ENST00000364509 141 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.415-201ENST00000384012 112 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 RNU6-793P-201ENST00000384233 104 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.59□□□□□ -2.31
LMX1AQ8TE12 ZNF885P-201ENST00000420174 1098 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.59□□□□□ -2.31
LMX1AQ8TE12 MTND1P26-201ENST00000440488 538 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 MTND4P18-201ENST00000447010 465 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.59□□□□□ -2.31
LMX1AQ8TE12 RPL30P10-201ENST00000488148 337 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 AC105758.1-201ENST00000506038 399 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.59□□□□□ -2.31
LMX1AQ8TE12 AC136628.3-201ENST00000521868 290 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.59□□□□□ -2.31
LMX1AQ8TE12 MIR5087-201ENST00000635826 76 ntBASIC0.59□□□□□ -2.31
LMX1AQ8TE12 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
LMX1AQ8TE12 RNU6-199P-201ENST00000362954 107 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.256-201ENST00000364594 104 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 RNU6-596P-201ENST00000365395 98 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 SNORD116-9-201ENST00000384000 95 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 SNORD116-3-201ENST00000384287 95 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 RNU6-424P-201ENST00000384367 105 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 SNORD116-7-201ENST00000384404 95 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 SNORD116-5-201ENST00000384462 95 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 MIR200A-201ENST00000384875 90 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 RNU6-910P-201ENST00000390844 107 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AF228730.1-201ENST00000397972 663 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AC243428.1-201ENST00000421099 264 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AC098934.3-201ENST00000430450 190 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 SEPT14P3-201ENST00000439401 183 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 MTCO3P18-201ENST00000440206 761 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AL732372.2-207ENST00000445840 183 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 SEPT14P2-201ENST00000453405 183 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 HMGN2P26-201ENST00000463169 339 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AC010598.1-201ENST00000510378 103 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 PSMC1P5-201ENST00000512850 177 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 SEPT14P4-201ENST00000513445 186 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 RNU6-917P-201ENST00000516294 104 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.688-201ENST00000516565 95 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 RNU6-922P-201ENST00000516753 99 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 147.7 ms