Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS53Q5VIR6 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS53Q5VIR6 RNU6-1266P-201ENST00000362794 105 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.101-201ENST00000363154 102 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 RNU1-23P-201ENST00000363361 144 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 U3.8-201ENST00000363675 217 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 RNU6-944P-201ENST00000364023 107 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.446-201ENST00000384178 104 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 MIR586-201ENST00000385035 97 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 AL023284.1-201ENST00000403956 276 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 AL603910.2-201ENST00000407268 136 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 RNU2-54P-201ENST00000410299 190 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 RNA5SP270-201ENST00000411361 118 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS53Q5VIR6 AC011753.1-201ENST00000451001 220 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 RNU5F-4P-201ENST00000516581 114 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 RNU6-1098P-201ENST00000516772 96 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 SCARNA24.2-201ENST00000516968 130 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 AC006001.4-201ENST00000622243 395 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 AC091932.3-201ENST00000624223 323 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS53Q5VIR6 AP006437.1-201ENST00000641440 3685 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 ZNF658B-202ENST00000615961 3375 ntBASIC2.63□□□□□ -1.99
VPS53Q5VIR6 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
VPS53Q5VIR6 SNORA3A-201ENST00000364113 130 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 RNU6-1026P-201ENST00000384465 108 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.515-201ENST00000384535 112 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.539-201ENST00000384635 107 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 RN7SKP223-201ENST00000410582 62 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 RNU6-1199P-201ENST00000411249 104 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 POLR2KP2-201ENST00000438155 177 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 HMGB3P3-201ENST00000510526 400 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 RNU1-117P-201ENST00000517041 158 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 RNU6-111P-201ENST00000517179 105 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 AC009127.3-201ENST00000570531 403 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 AL109918.3-201ENST00000603072 338 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 AC010900.2-201ENST00000604508 210 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 AC013412.1-201ENST00000610687 192 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 AC131280.1-202ENST00000624067 4211 ntBASIC2.62□□□□□ -1.99
VPS53Q5VIR6 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS53Q5VIR6 SNORD27-201ENST00000363981 72 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 RNY1-201ENST00000364228 113 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 SNORD87-201ENST00000364849 89 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 RNU6-234P-201ENST00000365229 104 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.383-201ENST00000383855 97 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 RNU6-546P-201ENST00000383991 107 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 MIR300-201ENST00000401138 83 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS53Q5VIR6 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS53Q5VIR6 RNU1-41P-201ENST00000516161 162 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 RNA5SP200-201ENST00000516360 103 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 RNU1-48P-201ENST00000516400 162 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 RNU6-107P-201ENST00000516643 102 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 RNU2-12P-201ENST00000517216 168 ntBASIC2.61□□□□□ -1.99
VPS53Q5VIR6 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
VPS53Q5VIR6 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS53Q5VIR6 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VPS53Q5VIR6 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS53Q5VIR6 SNORA25.1-201ENST00000362326 128 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 SNORA64-201ENST00000384674 134 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 SNORA48.3-201ENST00000391081 134 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 RNU2-32P-201ENST00000411193 191 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 EDDM3CP-201ENST00000415977 425 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS53Q5VIR6 RPL23AP3-201ENST00000453844 468 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 SNORA4.4-201ENST00000515921 135 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 RNU4-71P-201ENST00000516258 113 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 AC026271.5-201ENST00000577873 130 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 MIR5002-201ENST00000584713 97 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 AC006380.1-201ENST00000603598 186 ntBASIC2.6□□□□□ -1.99
VPS53Q5VIR6 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.44-201ENST00000362676 108 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 U8.2-201ENST00000363156 134 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.277-201ENST00000364754 102 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 Y_RNA.418-201ENST00000384029 102 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 RNU6-514P-201ENST00000384208 107 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 SNORA67.3-201ENST00000384366 140 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS53Q5VIR6 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 HMGN2P9-201ENST00000476875 229 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 AC018868.1-201ENST00000491307 315 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS53Q5VIR6 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.59□□□□□ -1.99
VPS53Q5VIR6 RNU6-155P-201ENST00000516347 100 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 RNU6-966P-201ENST00000516479 104 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 SCARNA16.3-201ENST00000516595 184 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 NDUFA5P6-201ENST00000542110 379 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS53Q5VIR6 AC009779.6-201ENST00000603972 165 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.59□□□□□ -1.99
VPS53Q5VIR6 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
VPS53Q5VIR6 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
VPS53Q5VIR6 UBE2WP1-201ENST00000362030 340 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 Y_RNA.54-201ENST00000362766 105 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 RNU6-454P-201ENST00000364292 107 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 RNU6-1305P-201ENST00000364353 104 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 RNU6-338P-201ENST00000383888 105 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 MIR1283-1-201ENST00000408494 87 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 AL135786.1-201ENST00000415892 214 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms