Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC007318.2-201ENST00000620999 243 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USP39Q53GS9 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.9□□□□□ -1.94
USP39Q53GS9 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.9□□□□□ -1.94
USP39Q53GS9 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.9□□□□□ -1.95
USP39Q53GS9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
USP39Q53GS9 RNU4-15P-201ENST00000362613 141 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 RNU6-153P-201ENST00000364422 104 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 Y_RNA.287-201ENST00000364853 94 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 Y_RNA.361-201ENST00000365515 120 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 Y_RNA.542-201ENST00000384641 111 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 SNORA8.3-201ENST00000384679 139 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 MIR887-201ENST00000401258 79 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 MIR513C-201ENST00000401352 84 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 AL133475.1-201ENST00000404414 305 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 AL355497.1-201ENST00000406262 551 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 MIR320B2-201ENST00000408479 138 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.9□□□□□ -1.95
USP39Q53GS9 SEM1P1-201ENST00000506694 209 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 RNU6-344P-201ENST00000516635 111 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 RNU6-107P-201ENST00000516643 102 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.9□□□□□ -1.95
USP39Q53GS9 AL359881.1-201ENST00000602916 267 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 AL391813.1-201ENST00000603098 260 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 AC091152.3-201ENST00000604227 325 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 AC012640.5-201ENST00000623897 319 ntBASIC2.9□□□□□ -1.95
USP39Q53GS9 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.9□□□□□ -1.95
USP39Q53GS9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP39Q53GS9 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
USP39Q53GS9 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP39Q53GS9 Y_RNA.24-201ENST00000362508 103 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 RNU6-1325P-201ENST00000364905 105 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 SNORA51.4-201ENST00000364993 124 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 Y_RNA.368-201ENST00000365547 113 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 RNU1-109P-201ENST00000383960 147 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 Y_RNA.420-201ENST00000384043 110 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 SNORA67.2-201ENST00000384300 149 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 MIR767-201ENST00000390228 109 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
USP39Q53GS9 AIMP1P2-201ENST00000425294 312 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 AC004386.2-201ENST00000441858 148 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.89□□□□□ -1.95
USP39Q53GS9 RNU6-1211P-201ENST00000459179 105 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 snoU13.14-201ENST00000459372 104 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.89□□□□□ -1.95
USP39Q53GS9 AP004217.1-201ENST00000480579 346 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 RPL23AP70-201ENST00000483361 460 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 AC007536.1-201ENST00000533382 349 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.89□□□□□ -1.95
USP39Q53GS9 SNORD11B-201ENST00000607707 90 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 MIR3199-2-201ENST00000636243 86 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 AC068205.3-201ENST00000636385 468 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
USP39Q53GS9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USP39Q53GS9 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
USP39Q53GS9 AC108206.1-201ENST00000570186 4159 ntBASIC2.89□□□□□ -1.95
USP39Q53GS9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USP39Q53GS9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USP39Q53GS9 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.88□□□□□ -1.95
USP39Q53GS9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
USP39Q53GS9 Y_RNA.293-201ENST00000364908 93 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 Y_RNA.310-201ENST00000365063 113 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.88□□□□□ -1.95
USP39Q53GS9 RNU6-376P-201ENST00000384731 106 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 MIR616-201ENST00000385293 97 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 AL139095.1-201ENST00000404326 391 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 RN7SKP123-201ENST00000410732 291 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 AC027124.2-201ENST00000428249 105 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.88□□□□□ -1.95
USP39Q53GS9 TRBV12-1-201ENST00000479785 344 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.88□□□□□ -1.95
USP39Q53GS9 Y_RNA.686-201ENST00000516548 134 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.88□□□□□ -1.95
USP39Q53GS9 EIF4A1P12-201ENST00000551910 141 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 Y_RNA.802-201ENST00000614892 130 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 TCL6_2.1-201ENST00000615162 119 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 AC005562.2-201ENST00000618264 111 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 UCA1.1-201ENST00000620952 75 ntBASIC2.88□□□□□ -1.95
USP39Q53GS9 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
USP39Q53GS9 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
USP39Q53GS9 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.87□□□□□ -1.95
USP39Q53GS9 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP39Q53GS9 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP39Q53GS9 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP39Q53GS9 Y_RNA.337-201ENST00000365312 102 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 MIR539-201ENST00000365690 78 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 RNU6-969P-201ENST00000383900 105 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 RNU6-80P-201ENST00000384195 107 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 MT-TT-201ENST00000387460 66 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 MIR526A2-201ENST00000390198 65 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 RNU6-710P-201ENST00000410424 105 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 RNU2-52P-201ENST00000410680 190 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 PTGES3P4-201ENST00000426243 356 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 RNU6-561P-201ENST00000516222 102 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 RNU6-1007P-201ENST00000516586 107 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 AC112693.2-201ENST00000556538 232 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 RPS15AP11-201ENST00000594193 385 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 U6.115-201ENST00000636045 103 ntBASIC2.87□□□□□ -1.95
USP39Q53GS9 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 614.1 ms