Protein–RNA interactions for Protein: Q15651

HMGN3, High mobility group nucleosome-binding domain-containing protein 3, humanhuman

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3Q15651 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC-1.16□□□□□ -2.6
HMGN3Q15651 MTCO3P8-201ENST00000453691 755 ntBASIC-1.16□□□□□ -2.6
HMGN3Q15651 MTND3P25-201ENST00000509243 135 ntBASIC-1.16□□□□□ -2.6
HMGN3Q15651 RNU6-448P-201ENST00000517052 107 ntBASIC-1.16□□□□□ -2.6
HMGN3Q15651 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-1.16□□□□□ -2.6
HMGN3Q15651 AP002004.2-201ENST00000531656 154 ntBASIC-1.16□□□□□ -2.6
HMGN3Q15651 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.16□□□□□ -2.6
HMGN3Q15651 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.16□□□□□ -2.6
HMGN3Q15651 FRG2DP-202ENST00000566967 323 ntBASIC-1.16□□□□□ -2.6
HMGN3Q15651 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC-1.16□□□□□ -2.6
HMGN3Q15651 SNORA43.4-201ENST00000629559 138 ntBASIC-1.16□□□□□ -2.6
HMGN3Q15651 MIR6828-201ENST00000636181 60 ntBASIC-1.16□□□□□ -2.6
HMGN3Q15651 RNU6-371P-201ENST00000364283 108 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 MIR136-201ENST00000385207 82 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 SNORA26.5-201ENST00000391215 123 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 AC243428.1-201ENST00000421099 264 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-1.17□□□□□ -2.6
HMGN3Q15651 CALM2P2-201ENST00000428512 440 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC-1.17□□□□□ -2.6
HMGN3Q15651 POLR2KP2-201ENST00000438155 177 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 MTND1P26-201ENST00000440488 538 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 MTCO1P27-201ENST00000448269 226 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 RNU2-12P-201ENST00000517216 168 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 MIR544B-201ENST00000582372 78 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 AC069545.1-201ENST00000605671 358 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 AP002802.2-201ENST00000605877 235 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 AC072039.2-201ENST00000608883 439 ntBASIC-1.17□□□□□ -2.6
HMGN3Q15651 MIR148A-201ENST00000362215 68 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 EEF1A1P40-201ENST00000412883 573 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 Z98949.2-201ENST00000440996 144 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 AC116562.3-201ENST00000506136 177 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 AC074198.2-201ENST00000508153 258 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-1.18□□□□□ -2.6
HMGN3Q15651 AC068587.5-201ENST00000528506 175 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-1.18□□□□□ -2.6
HMGN3Q15651 AL355375.2-201ENST00000574825 175 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 MIR548AD-201ENST00000584780 82 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 AL590491.3-201ENST00000610731 82 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 AC012409.4-201ENST00000612923 249 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 AC091304.10-201ENST00000641554 121 ntBASIC-1.18□□□□□ -2.6
HMGN3Q15651 SNORD114-14-201ENST00000362723 75 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 MT-TN-201ENST00000387400 73 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 MTCO2P33-201ENST00000402100 465 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 RN7SKP142-201ENST00000411236 328 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 SNORD123-201ENST00000459473 70 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-1.19□□□□□ -2.6
HMGN3Q15651 MIR3925-201ENST00000584674 77 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 AP000753.3-201ENST00000604083 169 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 AC144521.1-201ENST00000607148 956 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 AC027279.3-201ENST00000625055 122 ntBASIC-1.19□□□□□ -2.6
HMGN3Q15651 RNU5B-2P-201ENST00000363036 113 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 RNU6-1322P-201ENST00000364309 107 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 RNU6-650P-201ENST00000365658 111 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 RNU2-54P-201ENST00000410299 190 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 RNU2-62P-201ENST00000410868 191 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 AC244250.2-201ENST00000418731 148 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-1.2□□□□□ -2.6
HMGN3Q15651 AC046134.1-201ENST00000514454 666 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC-1.2□□□□□ -2.6
HMGN3Q15651 MIR5692A1-201ENST00000580523 69 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 AC073539.2-201ENST00000597113 165 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 AP000907.4-201ENST00000604143 237 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 AC008873.1-201ENST00000625051 138 ntBASIC-1.2□□□□□ -2.6
HMGN3Q15651 Y_RNA.100-201ENST00000363141 102 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 SNORA67.2-201ENST00000384300 149 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 MIR15B-201ENST00000385045 98 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 MIR125B2-201ENST00000385128 89 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 RNU6-735P-201ENST00000410612 107 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 RNA5SP25-201ENST00000410815 110 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 AL353572.1-201ENST00000442490 417 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 MRPS10P1-201ENST00000448483 130 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 RNU6-341P-201ENST00000516973 96 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 RNU7-156P-201ENST00000517214 74 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 AC018448.1-201ENST00000552843 316 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 AL139418.1-201ENST00000613613 177 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 AC023158.2-201ENST00000614876 543 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 UGP2-231ENST00000627474 264 ntTSL 5 BASIC-1.21□□□□□ -2.6
HMGN3Q15651 SCARNA4-201ENST00000629045 128 ntBASIC-1.21□□□□□ -2.6
HMGN3Q15651 RNU6-1266P-201ENST00000362794 105 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 RNU6-873P-201ENST00000363833 107 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 Y_RNA.477-201ENST00000384352 108 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 MIR562-201ENST00000384894 95 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 SNORA75.1-201ENST00000391130 148 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 AL355994.1-201ENST00000424379 260 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 TRIM60P10Y-201ENST00000425589 751 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-1.22□□□□□ -2.6
HMGN3Q15651 PRDX4P1-201ENST00000507189 574 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-1.22□□□□□ -2.6
HMGN3Q15651 SNORD92-201ENST00000585078 85 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 OR4H6P-202ENST00000603819 340 ntBASIC-1.22□□□□□ -2.6
HMGN3Q15651 RNU6-1048P-201ENST00000364054 107 ntBASIC-1.23□□□□□ -2.61
HMGN3Q15651 Y_RNA.270-201ENST00000364693 104 ntBASIC-1.23□□□□□ -2.61
HMGN3Q15651 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-1.23□□□□□ -2.61
HMGN3Q15651 AL390729.2-201ENST00000416137 156 ntBASIC-1.23□□□□□ -2.61
HMGN3Q15651 RNU6-1037P-201ENST00000459571 107 ntBASIC-1.23□□□□□ -2.61
HMGN3Q15651 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC-1.23□□□□□ -2.61
HMGN3Q15651 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC-1.23□□□□□ -2.61
HMGN3Q15651 AC245008.1-201ENST00000608123 476 ntBASIC-1.23□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms