Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 MIR371B-201ENST00000638082 66 ntBASIC-0.1□□□□□ -2.43
NUP98P52948 RNU6-1127P-201ENST00000384580 107 ntBASIC-0.1□□□□□ -2.43
NUP98P52948 RNU6-1242P-201ENST00000391052 103 ntBASIC-0.1□□□□□ -2.43
NUP98P52948 PDCL2P1-201ENST00000419302 352 ntBASIC-0.1□□□□□ -2.43
NUP98P52948 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-0.1□□□□□ -2.43
NUP98P52948 AC097462.1-201ENST00000514125 324 ntBASIC-0.1□□□□□ -2.43
NUP98P52948 MTATP6P9-201ENST00000515039 680 ntBASIC-0.1□□□□□ -2.43
NUP98P52948 RNU6-341P-201ENST00000516973 96 ntBASIC-0.1□□□□□ -2.43
NUP98P52948 AC138749.5-201ENST00000611461 208 ntBASIC-0.1□□□□□ -2.43
NUP98P52948 RNU6-1317P-201ENST00000364582 104 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 RNU6-169P-201ENST00000365336 107 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 SNORD73A-201ENST00000386062 65 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC-0.11□□□□□ -2.43
NUP98P52948 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-0.11□□□□□ -2.43
NUP98P52948 snoU13.6-201ENST00000458785 104 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 RNU7-128P-201ENST00000517247 62 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-0.11□□□□□ -2.43
NUP98P52948 MIR4764-201ENST00000580680 88 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 AC069431.2-201ENST00000604149 1099 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 SNORD11B-201ENST00000607707 90 ntBASIC-0.11□□□□□ -2.43
NUP98P52948 RNU6-266P-201ENST00000364225 107 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 U8.7-201ENST00000364940 136 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 RNU6-157P-201ENST00000383957 107 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 MIR573-201ENST00000384964 99 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.12□□□□□ -2.43
NUP98P52948 RPS29P8-201ENST00000445109 171 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 USP9YP29-201ENST00000445112 563 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 RNU7-138P-201ENST00000459479 64 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 RNA5SP227-201ENST00000516184 113 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 MIR3678-201ENST00000578455 94 ntBASIC-0.12□□□□□ -2.43
NUP98P52948 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.13□□□□□ -2.43
NUP98P52948 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC-0.13□□□□□ -2.43
NUP98P52948 GMFBP1-201ENST00000467831 427 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 AC091021.1-201ENST00000468051 388 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC-0.13□□□□□ -2.43
NUP98P52948 RNU6-977P-201ENST00000516411 103 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 MIR4509-3-201ENST00000578671 94 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 MIR4509-2-201ENST00000583920 94 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 AC068790.2-201ENST00000602601 557 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 RNU6-85P-201ENST00000605989 107 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 MIR4509-1-201ENST00000618224 94 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 AC139792.3-201ENST00000623525 224 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 RNU6-302P-201ENST00000365249 107 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 RNU6-906P-201ENST00000384700 70 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 MIR136-201ENST00000385207 82 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC-0.13□□□□□ -2.43
NUP98P52948 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC-0.13□□□□□ -2.43
NUP98P52948 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC-0.13□□□□□ -2.43
NUP98P52948 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.13□□□□□ -2.43
NUP98P52948 RPL23AP75-201ENST00000491601 451 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 RNU6-430P-201ENST00000517078 107 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 MTND2P32-201ENST00000521584 1038 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 AP002004.2-201ENST00000531656 154 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 AL158211.1-201ENST00000566763 763 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 MIR4290-201ENST00000583807 95 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 U2.17-201ENST00000611454 95 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-0.13□□□□□ -2.43
NUP98P52948 MTND4P9-201ENST00000507819 1346 ntBASIC-0.13□□□□□ -2.43
NUP98P52948 AC005592.1-201ENST00000566527 1640 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 SNORA1B-201ENST00000362535 133 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 RNU6-1266P-201ENST00000362794 105 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 RNU6-1303P-201ENST00000364841 107 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 MIR604-201ENST00000384880 94 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 MIR520G-201ENST00000385064 90 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 MIR520H-201ENST00000385126 88 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 MTND3P9-201ENST00000429526 346 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-0.14□□□□□ -2.43
NUP98P52948 PCNPP5-201ENST00000452246 481 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC-0.14□□□□□ -2.43
NUP98P52948 RNU2-69P-201ENST00000516061 100 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 SNORA25.14-201ENST00000516481 132 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 RNU2-56P-201ENST00000516826 190 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 RNU6-1220P-201ENST00000517126 108 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 AC018714.1-201ENST00000605028 208 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 AC104408.1-201ENST00000605241 170 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 RMST_3.1-201ENST00000611651 109 ntBASIC-0.14□□□□□ -2.43
NUP98P52948 MIR409-201ENST00000362237 79 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 Y_RNA.267-201ENST00000364679 109 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 RNU6-679P-201ENST00000391003 106 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 SNORA40.8-201ENST00000411034 126 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.15□□□□□ -2.43
NUP98P52948 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-0.15□□□□□ -2.43
NUP98P52948 AC093534.1-201ENST00000504977 132 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 RNU7-43P-201ENST00000516554 64 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 AC023157.2-201ENST00000540596 141 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-0.15□□□□□ -2.43
NUP98P52948 AC078938.1-201ENST00000620993 318 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 MIR1295B-201ENST00000636144 60 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 RNU6-660P-201ENST00000364566 109 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 RNU6V-201ENST00000384105 107 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.15□□□□□ -2.43
NUP98P52948 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-0.15□□□□□ -2.43
NUP98P52948 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-0.15□□□□□ -2.43
NUP98P52948 AC093027.1-201ENST00000546698 429 ntBASIC-0.15□□□□□ -2.43
NUP98P52948 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC-0.15□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms